Your message dated Sat, 27 Jul 2024 18:52:46 +0200
with message-id <[email protected]>
and subject line Closing: mistake
has caused the Debian Bug report #1077264,
regarding FTBFS: embossupdate.o: undefined reference to symbol 'zlibVersion'
to be marked as done.
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--
1077264: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1077264
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: emboss
Version: 6.6.0+dfsg-16
Severity: serious
Tags: ftbfs
Dear Maintainer,
emboss FTBFS on amd64, relevant part of the build log:
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -lexpat -L/usr/lib/x86_64-linux-gnu/
-lmariadb -lpq -Wl,-z,relro -Wl,-z,now -o embossupdate embossupdate.o
../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la
../ajax/core/libajax.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -lX11
-lm -lhpdf
libtool: link: gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/einverted einverted.o -lexpat
-L/usr/lib/x86_64-linux-gnu/ -lmariadb -lpq ../nucleus/.libs/libnucleus.so
../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so
../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so
../ajax/core/.libs/libajax.so ../ajax/pcre/.libs/libepcre.so
../plplot/.libs/libeplplot.so -lX11 -lm -lhpdf -Wl,-rpath
-Wl,/usr/lib/emboss/lib
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -lexpat -L/usr/lib/x86_64-linux-gnu/
-lmariadb -lpq -Wl,-z,relro -Wl,-z,now -o embossversion embossversion.o
../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la
../ajax/core/libajax.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -lX11
-lm -lhpdf
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -lexpat -L/usr/lib/x86_64-linux-gnu/
-lmariadb -lpq -Wl,-z,relro -Wl,-z,now -o emma emma.o ../nucleus/libnucleus.la
../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la ../ajax/ensembl/libensembl.la
../ajax/graphics/libajaxg.la ../ajax/core/libajax.la ../ajax/pcre/libepcre.la
../plplot/libeplplot.la -lX11 -lm -lhpdf
libtool: link: gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/embossdata embossdata.o -lexpat
-L/usr/lib/x86_64-linux-gnu/ -lmariadb -lpq ../nucleus/.libs/libnucleus.so
../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so
../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so
../ajax/core/.libs/libajax.so ../ajax/pcre/.libs/libepcre.so
../plplot/.libs/libeplplot.so -lX11 -lm -lhpdf -Wl,-rpath
-Wl,/usr/lib/emboss/lib
libtool: link: gcc -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/embossupdate embossupdate.o -lexpat
-L/usr/lib/x86_64-linux-gnu/ -lmariadb -lpq ../nucleus/.libs/libnucleus.so
../ajax/acd/.libs/libacd.so ../ajax/ajaxdb/.libs/libajaxdb.so
../ajax/ensembl/.libs/libensembl.so ../ajax/graphics/.libs/libajaxg.so
../ajax/core/.libs/libajax.so ../ajax/pcre/.libs/libepcre.so
../plplot/.libs/libeplplot.so -lX11 -lm -lhpdf -Wl,-rpath
-Wl,/usr/lib/emboss/lib
/bin/bash ../libtool --tag=CC --mode=link gcc -g -O2
-Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -lexpat -L/usr/lib/x86_64-linux-gnu/
-lmariadb -lpq -Wl,-z,relro -Wl,-z,now -o emowse emowse.o
../nucleus/libnucleus.la ../ajax/acd/libacd.la ../ajax/ajaxdb/libajaxdb.la
../ajax/ensembl/libensembl.la ../ajax/graphics/libajaxg.la
../ajax/core/libajax.la ../ajax/pcre/libepcre.la ../plplot/libeplplot.la -lX11
-lm -lhpdf
/usr/bin/ld: embossupdate.o: undefined reference to symbol 'zlibVersion'
/usr/bin/ld: /lib/x86_64-linux-gnu/libz.so.1: error adding symbols: DSO missing
from command line
collect2: error: ld returned 1 exit status
make[4]: *** [Makefile:4241: embossupdate] Error 1
Best,
--
Pierre
--- End Message ---
--- Begin Message ---
Version: 6.6.0+dfsg-15
Sorry, this bug is a false positive. Closing
--
Pierre
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--- End Message ---
