Your message dated Wed, 07 Aug 2024 09:35:17 +0000
with message-id <[email protected]>
and subject line Bug#1075154: fixed in libbpp-seq-omics 2.4.1-12
has caused the Debian Bug report #1075154,
regarding libbpp-seq-omics: ftbfs with GCC-14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1075154: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1075154
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:libbpp-seq-omics
Version: 2.4.1-11
Severity: important
Tags: sid trixie
User: [email protected]
Usertags: ftbfs-gcc-14
[This bug is targeted to the upcoming trixie release]
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-14/g++-14, but succeeds to build with gcc-13/g++-13. The
severity of this report will be raised before the trixie release.
The full build log can be found at:
http://qa-logs.debian.net/2024/07/01/libbpp-seq-omics_2.4.1-11_unstable_gccexp.log
The last lines of the build log are at the end of this report.
To build with GCC 14, either set CC=gcc-14 CXX=g++-14 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-14/porting_to.html
[...]
-
_ZNSt6vectorIS_IiSaIiEESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base
2.4.1
+ _ZNSt6vectorIS_IiSaIiEESaIS1_EE17_M_realloc_appendIJRKS1_EEEvDpOT_@Base
2.4.1-11
+#MISSING: 2.4.1-11#
_ZNSt6vectorIS_IiSaIiEESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base
2.4.1
_ZNSt6vectorIS_IiSaIiEESaIS1_EED1Ev@Base 2.4.1
_ZNSt6vectorIS_IiSaIiEESaIS1_EED2Ev@Base 2.4.1
_ZNSt6vectorIS_ImSaImEESaIS1_EED1Ev@Base 2.4.1
@@ -545,35 +553,41 @@
_ZNSt6vectorIbSaIbEEC1ERKS1_@Base 2.4.1
_ZNSt6vectorIbSaIbEEC2ERKS1_@Base 2.4.1
_ZNSt6vectorIiSaIiEE17_M_default_appendEm@Base 2.4.1
-
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base
2.4.1
- _ZNSt6vectorIiSaIiEED1Ev@Base 2.4.1
- _ZNSt6vectorIiSaIiEED2Ev@Base 2.4.1
+ _ZNSt6vectorIiSaIiEE17_M_realloc_appendIJRKiEEEvDpOT_@Base 2.4.1-11
+#MISSING: 2.4.1-11#
_ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base
2.4.1
+#MISSING: 2.4.1-11# _ZNSt6vectorIiSaIiEED1Ev@Base 2.4.1
+#MISSING: 2.4.1-11# _ZNSt6vectorIiSaIiEED2Ev@Base 2.4.1
_ZNSt6vectorIjSaIjEE14_M_fill_assignEmRKj@Base 2.4.1
-
_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base
2.4.1
-
_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base
2.4.1
-
_ZNSt6vectorImSaImEE17_M_realloc_insertIJmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base
2.4.1
- _ZNSt6vectorImSaImEED1Ev@Base 2.4.1
- _ZNSt6vectorImSaImEED2Ev@Base 2.4.1
+#MISSING: 2.4.1-11#
_ZNSt6vectorIjSaIjEE17_M_realloc_insertIJjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base
2.4.1
+ _ZNSt6vectorImSaImEE12emplace_backIJmEEEvDpOT_@Base 2.4.1-11
+ _ZNSt6vectorImSaImEE17_M_realloc_appendIJRKmEEEvDpOT_@Base 2.4.1-11
+#MISSING: 2.4.1-11#
_ZNSt6vectorImSaImEE17_M_realloc_insertIJRKmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt6vectorImSaImEE17_M_realloc_insertIJmEEEvN9__gnu_cxx17__normal_iteratorIPmS1_EEDpOT_@Base
2.4.1
+ _ZNSt6vectorImSaImEEC1ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_@Base 2.4.1-11
+ _ZNSt6vectorImSaImEEC2ISt15_Deque_iteratorImRmPmEvEET_S7_RKS0_@Base 2.4.1-11
+#MISSING: 2.4.1-11# _ZNSt6vectorImSaImEED1Ev@Base 2.4.1
+#MISSING: 2.4.1-11# _ZNSt6vectorImSaImEED2Ev@Base 2.4.1
_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED0Ev@Base 2.4.1
_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED1Ev@Base 2.4.1
_ZNSt7__cxx1115basic_stringbufIcSt11char_traitsIcESaIcEED2Ev@Base 2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base
2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp10BppNumberIEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base
2.4.1
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3mapIcS8_ImS8_ImmSt4lessImESaIS6_IKmmEEESA_SaIS6_ISB_SE_EEES9_IcESaIS6_IKcSH_EEEESt10_Select1stISN_ES9_IS5_ESaISN_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3mapIcS8_ImS8_ImmSt4lessImESaIS6_IKmmEEESA_SaIS6_ISB_SE_EEES9_IcESaIS6_IKcSH_EEEESt10_Select1stISN_ES9_IS5_ESaISN_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISN_ERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
-
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3mapIcS8_ImS8_ImmSt4lessImESaIS6_IKmmEEESA_SaIS6_ISB_SE_EEES9_IcESaIS6_IKcSH_EEEESt10_Select1stISN_ES9_IS5_ESaISN_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_St3mapIcS8_ImS8_ImmSt4lessImESaIS6_IKmmEEESA_SaIS6_ISB_SE_EEES9_IcESaIS6_IKcSH_EEEESt10_Select1stISN_ES9_IS5_ESaISN_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISN_ERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base
2.4.1
+#MISSING: 2.4.1-11#
_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_jESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base
2.4.1
_ZNSt8_Rb_treeIPN3bpp5RangeImEES3_St9_IdentityIS3_ENS0_10rangeComp_ImEESaIS3_EE16_M_insert_uniqueIS3_EESt4pairISt17_Rb_tree_iteratorIS3_EbEOT_@Base
2.4.1
+
_ZNSt8_Rb_treeIiSt4pairIKiNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIiESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base
2.4.1-11
_ZSt13__heap_selectIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops15_Iter_less_iterEEvT_SF_SF_T0_@Base
2.4.1
_ZSt16__do_uninit_copyIN9__gnu_cxx17__normal_iteratorIPKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEEPS7_ET0_T_SG_SF_@Base
2.4.1
_ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPPN3bpp5RangeImEESt6vectorIS5_SaIS5_EEEElNS0_5__ops15_Iter_comp_iterINS2_10rangeComp_ImEEEEEvT_SG_T0_T1_@Base
2.4.1
- _ZSteqIbSaIbEEbRKSt6vectorIT_T0_ES6_@Base 2.4.1-11~
+#MISSING: 2.4.1-11# _ZSteqIbSaIbEEbRKSt6vectorIT_T0_ES6_@Base 2.4.1-11~
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_S9_@Base
2.4.1
_ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEPKS5_OS8_@Base
2.4.1
_ZTIN3bpp10BppIntegerE@Base 2.4.1
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:8: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: libbpp-seq-omics
Source-Version: 2.4.1-12
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
libbpp-seq-omics, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated libbpp-seq-omics package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 07 Aug 2024 11:05:55 +0200
Source: libbpp-seq-omics
Architecture: source
Version: 2.4.1-12
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1075154
Changes:
libbpp-seq-omics (2.4.1-12) unstable; urgency=medium
.
* Since every GCC version bump ends up in a bug caused by the need to
update symbols files we stop providing symbols for this library
Closes: #1075154
* lintian-override for no-symbols-control-file
* Standards-Version: 4.7.0
Checksums-Sha1:
3c65489f6c763ef7bc59bd77a348057c27a58b2d 2244 libbpp-seq-omics_2.4.1-12.dsc
b716609713314d14959e1439105a7d443197eb92 11380
libbpp-seq-omics_2.4.1-12.debian.tar.xz
3c84bd2344b1dd67a857792458ec0a41ed28a8ed 7948
libbpp-seq-omics_2.4.1-12_amd64.buildinfo
Checksums-Sha256:
8ab49b4aef9667266383727adb016e839a2ba3902e2ba42c32684c7371076b1f 2244
libbpp-seq-omics_2.4.1-12.dsc
76b96c1f3d74d9f89a6d2919fd34d3da2af6685155cd86e15e37cb0703b2311d 11380
libbpp-seq-omics_2.4.1-12.debian.tar.xz
866926b86853f8699d1c6987318bb378bb2a72feb2d4cd66701c1a4b702921b4 7948
libbpp-seq-omics_2.4.1-12_amd64.buildinfo
Files:
e82651b3e6aca6f5f843e78bb5736a85 2244 science optional
libbpp-seq-omics_2.4.1-12.dsc
c10c74c6ed940629abce7fc2ed8bd83f 11380 science optional
libbpp-seq-omics_2.4.1-12.debian.tar.xz
fcfa5b215da6d66709a5c7b9f76ec318 7948 science optional
libbpp-seq-omics_2.4.1-12_amd64.buildinfo
-----BEGIN PGP SIGNATURE-----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=FNgh
-----END PGP SIGNATURE-----
pgp36aMwQexK0.pgp
Description: PGP signature
--- End Message ---