Your message dated Sun, 11 Aug 2024 21:22:55 +0000
with message-id <e1sdg1f-000l3m...@fasolo.debian.org>
and subject line Bug#1078472: fixed in genomicsdb 1.5.3-3
has caused the Debian Bug report #1078472,
regarding libgenomicsdb1: missing Breaks+Replaces: libgenomicsdb0 (<< 1.5.3)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
1078472: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1078472
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libgenomicsdb1
Version: 1.5.3-2
Severity: serious
User: debian...@lists.debian.org
Usertags: piuparts fileconflict
Hi,
during a test with piuparts I noticed your package fails to upgrade from
'stable'.
It installed fine in 'stable', then the upgrade to 'sid' fails
because it tries to overwrite other packages files without declaring a
Breaks+Replaces relation.
See policy 7.6 at
https://www.debian.org/doc/debian-policy/ch-relationships.html#overwriting-files-and-replacing-packages-replaces
This test intentionally skipped 'testing' to find file overwrite
problems before packages migrate from 'unstable' to 'testing'.
>From the attached log (scroll to the bottom...):
Preparing to unpack .../libgenomicsdb1_1.5.3-2_amd64.deb ...
Unpacking libgenomicsdb1 (1.5.3-2) ...
dpkg: error processing archive
/var/cache/apt/archives/libgenomicsdb1_1.5.3-2_amd64.deb (--unpack):
trying to overwrite
'/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so', which is also in
package libgenomicsdb0 1.4.4-3
Errors were encountered while processing:
/var/cache/apt/archives/libgenomicsdb1_1.5.3-2_amd64.deb
The conflicting files are
/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-hts.so
/usr/lib/x86_64-linux-gnu/genomicsdb/libgenomicsdb-tiledb.so
cheers,
Andreas
libgenomicsdb0=1.4.4-3_libgenomicsdb1=1.5.3-2.log.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: genomicsdb
Source-Version: 1.5.3-3
Done: Pierre Gruet <p...@debian.org>
We believe that the bug you reported is fixed in the latest version of
genomicsdb, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1078...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <p...@debian.org> (supplier of updated genomicsdb package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sun, 11 Aug 2024 22:56:12 +0200
Source: genomicsdb
Architecture: source
Version: 1.5.3-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Pierre Gruet <p...@debian.org>
Closes: 1078472
Changes:
genomicsdb (1.5.3-3) unstable; urgency=medium
.
* Adding Breaks+Replaces: libgenomicsdb0 for libgenomicsdb1
(Closes: #1078472)
Checksums-Sha1:
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genomicsdb_1.5.3-3_source.buildinfo
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genomicsdb_1.5.3-3_source.buildinfo
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38468eb7b07a5b7ec482c40a1884f2c1 28624 science optional
genomicsdb_1.5.3-3.debian.tar.xz
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