Your message dated Thu, 15 Aug 2024 10:38:59 +0000
with message-id <e1sexsh-000blj...@fasolo.debian.org>
and subject line Bug#1077393: fixed in seqan3 3.3.0+ds-2
has caused the Debian Bug report #1077393,
regarding seqan3: FTBFS: stl_algobase.h:1874:39: error: ‘int
__builtin_memcmp(const void*, const void*, long unsigned int)’ specified bound
[9223372036854775808, 18446744073709551615] exceeds maximum object size
9223372036854775807 [-Werror=stringop-overread]
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1077393: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1077393
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: seqan3
Version: 3.3.0+ds-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20240728 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1
> -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem
> /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fuse-ld=gold -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall
> -Wextra -Werror -Wno-interference-size -std=c++20 -MD -MT
> search/CMakeFiles/search_scheme_test.dir/search_scheme_test.cpp.o -MF
> search/CMakeFiles/search_scheme_test.dir/search_scheme_test.cpp.o.d -o
> search/CMakeFiles/search_scheme_test.dir/search_scheme_test.cpp.o -c
> /<<PKGBUILDDIR>>/test/unit/search/search_scheme_test.cpp
> In file included from
> /<<PKGBUILDDIR>>/include/seqan3/search/detail/search_common.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/search/detail/search_scheme_algorithm.hpp:17,
> from
> /<<PKGBUILDDIR>>/test/unit/search/search_scheme_test.cpp:13:
> /<<PKGBUILDDIR>>/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma
> message: Your compiler is newer than the latest supported compiler of this
> SeqAn version (gcc-13). It might be that SeqAn does not compile due to this.
> You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’
> 85 | "Your compiler is newer than the latest supported
> compiler of this SeqAn version (gcc-13). It might be that SeqAn does not
> compile due to this. You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC."
> |
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> In file included from /usr/include/c++/14/bits/stl_uninitialized.h:63,
> from /usr/include/c++/14/memory:69,
> from /usr/include/gtest/gtest.h:55,
> from
> /<<PKGBUILDDIR>>/test/unit/search/search_scheme_test.cpp:8:
> In function ‘constexpr decltype (__comp((* __first1), (* __first2)))
> std::lexicographical_compare_three_way(_InputIter1, _InputIter1, _InputIter2,
> _InputIter2, _Comp) [with _InputIter1 = __gnu_cxx::__normal_iterator<const
> unsigned char*, vector<unsigned char> >; _InputIter2 =
> __gnu_cxx::__normal_iterator<const unsigned char*, vector<unsigned char> >;
> _Comp = __detail::_Synth3way]’,
> inlined from ‘constexpr std::__detail::__synth3way_t<_Iterator>
> std::operator<=>(const vector<_Tp, _Alloc>&, const vector<_Tp, _Alloc>&)
> [with _Tp = unsigned char; _Alloc = allocator<unsigned char>]’ at
> /usr/include/c++/14/bits/stl_vector.h:2071:52,
> inlined from ‘constexpr bool
> __gnu_cxx::__ops::_Val_less_iter::operator()(_Value&, _Iterator) const [with
> _Value = std::vector<unsigned char>; _Iterator =
> __gnu_cxx::__normal_iterator<std::vector<unsigned char>*,
> std::vector<std::vector<unsigned char> > >]’ at
> /usr/include/c++/14/bits/predefined_ops.h:98:22,
> inlined from ‘constexpr void
> std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with
> _RandomAccessIterator = __gnu_cxx::__normal_iterator<vector<unsigned char>*,
> vector<vector<unsigned char> > >; _Compare =
> __gnu_cxx::__ops::_Val_less_iter]’ at
> /usr/include/c++/14/bits/stl_algo.h:1757:20,
> inlined from ‘constexpr void
> std::__unguarded_insertion_sort(_RandomAccessIterator, _RandomAccessIterator,
> _Compare) [with _RandomAccessIterator =
> __gnu_cxx::__normal_iterator<vector<unsigned char>*, vector<vector<unsigned
> char> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at
> /usr/include/c++/14/bits/stl_algo.h:1798:32,
> inlined from ‘constexpr void
> std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator,
> _Compare) [with _RandomAccessIterator =
> __gnu_cxx::__normal_iterator<vector<unsigned char>*, vector<vector<unsigned
> char> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at
> /usr/include/c++/14/bits/stl_algo.h:1818:35,
> inlined from ‘constexpr void std::__sort(_RandomAccessIterator,
> _RandomAccessIterator, _Compare) [with _RandomAccessIterator =
> __gnu_cxx::__normal_iterator<vector<unsigned char>*, vector<vector<unsigned
> char> > >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’ at
> /usr/include/c++/14/bits/stl_algo.h:1908:31:
> /usr/include/c++/14/bits/stl_algobase.h:1874:39: error: ‘int
> __builtin_memcmp(const void*, const void*, long unsigned int)’ specified
> bound [9223372036854775808, 18446744073709551615] exceeds maximum object size
> 9223372036854775807 [-Werror=stringop-overread]
> 1874 | = __builtin_memcmp(&*__first1, &*__first2,
> __blen) <=> 0;
> | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> cc1plus: all warnings being treated as errors
> [236/622] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1
> -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem
> /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fuse-ld=gold -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall
> -Wextra -Werror -Wno-interference-size -std=c++20 -MD -MT
> search/dream_index/CMakeFiles/interleaved_bloom_filter_test.dir/interleaved_bloom_filter_test.cpp.o
> -MF
> search/dream_index/CMakeFiles/interleaved_bloom_filter_test.dir/interleaved_bloom_filter_test.cpp.o.d
> -o
> search/dream_index/CMakeFiles/interleaved_bloom_filter_test.dir/interleaved_bloom_filter_test.cpp.o
> -c
> /<<PKGBUILDDIR>>/test/unit/search/dream_index/interleaved_bloom_filter_test.cpp
> In file included from
> /<<PKGBUILDDIR>>/include/seqan3/core/concept/cereal.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/search/dream_index/interleaved_bloom_filter.hpp:20,
> from
> /<<PKGBUILDDIR>>/test/unit/search/dream_index/interleaved_bloom_filter_test.cpp:10:
> /<<PKGBUILDDIR>>/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma
> message: Your compiler is newer than the latest supported compiler of this
> SeqAn version (gcc-13). It might be that SeqAn does not compile due to this.
> You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’
> 85 | "Your compiler is newer than the latest supported
> compiler of this SeqAn version (gcc-13). It might be that SeqAn does not
> compile due to this. You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC."
> |
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> [237/622] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1
> -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem
> /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fuse-ld=gold -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall
> -Wextra -Werror -Wno-interference-size -std=c++20 -MD -MT
> search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o
> -MF
> search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o.d
> -o
> search/CMakeFiles/search_scheme_algorithm_test.dir/search_scheme_algorithm_test.cpp.o
> -c /<<PKGBUILDDIR>>/test/unit/search/search_scheme_algorithm_test.cpp
> In file included from
> /<<PKGBUILDDIR>>/include/seqan3/utility/char_operations/pretty_print.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/exception.hpp:19,
> from /<<PKGBUILDDIR>>/include/seqan3/alphabet/concept.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/detail/debug_stream_alphabet.hpp:15,
> from
> /<<PKGBUILDDIR>>/test/unit/search/search_scheme_algorithm_test.cpp:13:
> /<<PKGBUILDDIR>>/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma
> message: Your compiler is newer than the latest supported compiler of this
> SeqAn version (gcc-13). It might be that SeqAn does not compile due to this.
> You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’
> 85 | "Your compiler is newer than the latest supported
> compiler of this SeqAn version (gcc-13). It might be that SeqAn does not
> compile due to this. You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC."
> |
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> [238/622] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1
> -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem
> /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fuse-ld=gold -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall
> -Wextra -Werror -Wno-interference-size -std=c++20 -MD -MT
> search/configuration/CMakeFiles/search_config_common_test.dir/search_config_common_test.cpp.o
> -MF
> search/configuration/CMakeFiles/search_config_common_test.dir/search_config_common_test.cpp.o.d
> -o
> search/configuration/CMakeFiles/search_config_common_test.dir/search_config_common_test.cpp.o
> -c
> /<<PKGBUILDDIR>>/test/unit/search/configuration/search_config_common_test.cpp
> In file included from
> /<<PKGBUILDDIR>>/include/seqan3/utility/type_traits/concept.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/utility/type_traits/detail/transformation_trait_or.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/core/detail/template_inspection.hpp:18,
> from
> /<<PKGBUILDDIR>>/include/seqan3/core/configuration/detail/concept.hpp:20,
> from
> /<<PKGBUILDDIR>>/include/seqan3/core/configuration/configuration.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/search/configuration/default_configuration.hpp:16,
> from
> /<<PKGBUILDDIR>>/include/seqan3/search/configuration/all.hpp:182,
> from
> /<<PKGBUILDDIR>>/test/unit/search/configuration/search_config_common_test.cpp:12:
> /<<PKGBUILDDIR>>/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma
> message: Your compiler is newer than the latest supported compiler of this
> SeqAn version (gcc-13). It might be that SeqAn does not compile due to this.
> You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’
> 85 | "Your compiler is newer than the latest supported
> compiler of this SeqAn version (gcc-13). It might be that SeqAn does not
> compile due to this. You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC."
> |
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> [239/622] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1
> -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem
> /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fuse-ld=gold -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall
> -Wextra -Werror -Wno-interference-size -std=c++20 -MD -MT
> search/fm_index/CMakeFiles/fm_index_dna4_test.dir/fm_index_dna4_test.cpp.o
> -MF
> search/fm_index/CMakeFiles/fm_index_dna4_test.dir/fm_index_dna4_test.cpp.o.d
> -o search/fm_index/CMakeFiles/fm_index_dna4_test.dir/fm_index_dna4_test.cpp.o
> -c /<<PKGBUILDDIR>>/test/unit/search/fm_index/fm_index_dna4_test.cpp
> In file included from
> /<<PKGBUILDDIR>>/include/seqan3/utility/char_operations/pretty_print.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/exception.hpp:19,
> from /<<PKGBUILDDIR>>/include/seqan3/alphabet/concept.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/alphabet_base.hpp:19,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp:15,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/nucleotide/dna4.hpp:17,
> from
> /<<PKGBUILDDIR>>/test/unit/search/fm_index/fm_index_dna4_test.cpp:8:
> /<<PKGBUILDDIR>>/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma
> message: Your compiler is newer than the latest supported compiler of this
> SeqAn version (gcc-13). It might be that SeqAn does not compile due to this.
> You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’
> 85 | "Your compiler is newer than the latest supported
> compiler of this SeqAn version (gcc-13). It might be that SeqAn does not
> compile due to this. You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC."
> |
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> [240/622] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1
> -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem
> /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fuse-ld=gold -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall
> -Wextra -Werror -Wno-interference-size -std=c++20 -MD -MT
> search/fm_index/CMakeFiles/bi_fm_index_dna4_test.dir/bi_fm_index_dna4_test.cpp.o
> -MF
> search/fm_index/CMakeFiles/bi_fm_index_dna4_test.dir/bi_fm_index_dna4_test.cpp.o.d
> -o
> search/fm_index/CMakeFiles/bi_fm_index_dna4_test.dir/bi_fm_index_dna4_test.cpp.o
> -c /<<PKGBUILDDIR>>/test/unit/search/fm_index/bi_fm_index_dna4_test.cpp
> In file included from
> /<<PKGBUILDDIR>>/include/seqan3/utility/char_operations/pretty_print.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/exception.hpp:19,
> from /<<PKGBUILDDIR>>/include/seqan3/alphabet/concept.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/alphabet_base.hpp:19,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp:15,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/nucleotide/dna4.hpp:17,
> from
> /<<PKGBUILDDIR>>/test/unit/search/fm_index/bi_fm_index_dna4_test.cpp:8:
> /<<PKGBUILDDIR>>/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma
> message: Your compiler is newer than the latest supported compiler of this
> SeqAn version (gcc-13). It might be that SeqAn does not compile due to this.
> You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’
> 85 | "Your compiler is newer than the latest supported
> compiler of this SeqAn version (gcc-13). It might be that SeqAn does not
> compile due to this. You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC."
> |
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> [241/622] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1
> -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem
> /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fuse-ld=gold -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall
> -Wextra -Werror -Wno-interference-size -std=c++20 -MD -MT
> search/CMakeFiles/search_collection_test.dir/search_collection_test.cpp.o -MF
> search/CMakeFiles/search_collection_test.dir/search_collection_test.cpp.o.d
> -o search/CMakeFiles/search_collection_test.dir/search_collection_test.cpp.o
> -c /<<PKGBUILDDIR>>/test/unit/search/search_collection_test.cpp
> In file included from
> /<<PKGBUILDDIR>>/include/seqan3/utility/char_operations/pretty_print.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/exception.hpp:19,
> from /<<PKGBUILDDIR>>/include/seqan3/alphabet/concept.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/alphabet_base.hpp:19,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp:15,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/nucleotide/dna4.hpp:17,
> from
> /<<PKGBUILDDIR>>/test/unit/search/search_collection_test.cpp:13:
> /<<PKGBUILDDIR>>/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma
> message: Your compiler is newer than the latest supported compiler of this
> SeqAn version (gcc-13). It might be that SeqAn does not compile due to this.
> You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’
> 85 | "Your compiler is newer than the latest supported
> compiler of this SeqAn version (gcc-13). It might be that SeqAn does not
> compile due to this. You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC."
> |
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> [242/622] /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1
> -I/<<PKGBUILDDIR>>/test/include -I/<<PKGBUILDDIR>>/include -isystem
> /<<PKGBUILDDIR>>/submodules/sdsl-lite/include -g -O2
> -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
> -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
> -fuse-ld=gold -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall
> -Wextra -Werror -Wno-interference-size -std=c++20 -MD -MT
> search/CMakeFiles/search_test.dir/search_test.cpp.o -MF
> search/CMakeFiles/search_test.dir/search_test.cpp.o.d -o
> search/CMakeFiles/search_test.dir/search_test.cpp.o -c
> /<<PKGBUILDDIR>>/test/unit/search/search_test.cpp
> In file included from
> /<<PKGBUILDDIR>>/include/seqan3/utility/char_operations/pretty_print.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/exception.hpp:19,
> from /<<PKGBUILDDIR>>/include/seqan3/alphabet/concept.hpp:17,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/alphabet_base.hpp:19,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/nucleotide/nucleotide_base.hpp:15,
> from
> /<<PKGBUILDDIR>>/include/seqan3/alphabet/nucleotide/dna4.hpp:17,
> from /<<PKGBUILDDIR>>/test/unit/search/search_test.cpp:13:
> /<<PKGBUILDDIR>>/include/seqan3/core/platform.hpp:85:17: note: ‘#pragma
> message: Your compiler is newer than the latest supported compiler of this
> SeqAn version (gcc-13). It might be that SeqAn does not compile due to this.
> You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC.’
> 85 | "Your compiler is newer than the latest supported
> compiler of this SeqAn version (gcc-13). It might be that SeqAn does not
> compile due to this. You can disable this warning by setting
> -DSEQAN3_DISABLE_NEWER_COMPILER_DIAGNOSTIC."
> |
> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> ninja: build stopped: subcommand failed.
> dh_auto_build: error: cd build_unit && LC_ALL=C.UTF-8 ninja -j8 -v returned
> exit code 1
> make[1]: *** [debian/rules:44: override_dh_auto_build] Error 25
The full build log is available from:
http://qa-logs.debian.net/2024/07/28/seqan3_3.3.0+ds-1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240728;users=lu...@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240728&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: seqan3
Source-Version: 3.3.0+ds-2
Done: Michael R. Crusoe <cru...@debian.org>
We believe that the bug you reported is fixed in the latest version of
seqan3, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1077...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <cru...@debian.org> (supplier of updated seqan3 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 15 Aug 2024 12:18:02 +0200
Source: seqan3
Architecture: source
Version: 3.3.0+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Michael R. Crusoe <cru...@debian.org>
Closes: 1077393
Changes:
seqan3 (3.3.0+ds-2) unstable; urgency=medium
.
* d/patch/0001-INFRA-gcc-14-support.patch: gift from upstream to fix FTBFS
Closes: #1077393
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seqan3_3.3.0+ds-2_source.buildinfo
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