Your message dated Thu, 07 Nov 2024 17:20:37 +0000
with message-id <[email protected]>
and subject line Bug#1082295: fixed in r-bioc-dropletutils 1.24.0+ds-2
has caused the Debian Bug report #1082295,
regarding r-bioc-dropletutils: autopkgtest failure on riscv64
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1082295: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1082295
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: r-bioc-dropletutils
Version: 1.24.0+ds-1
Tags: patch
Hi Maintainer
The autopkgtests of r-bioc-dropletutils are failing on riscv64 [1].
I've copied what I hope is the relevant part of the log below.
The following patch worked for me:
--- a/tests/testthat/test-hashing.R
+++ b/tests/testthat/test-hashing.R
@@ -241,7 +241,7 @@
out <- hashedDrops(mat[keep,,drop=FALSE],
combinations=rbind(4:2), ambient=ambient[keep])
SCALING <- median(mat[keep]/ambient[keep])
PSEUDO <- mean(ambient[keep]) * SCALING
- expect_identical(out$LogFC, .compute_expected_lfc(SCALING, PSEUDO))
+ expect_equal(out$LogFC, .compute_expected_lfc(SCALING, PSEUDO))
}
})
I am not sure whether it is preferable to maintain such a patch, or
update the list of architectures in
debian/tests/autopkgtest-pkg-r.hook.
Regards
Graham
[1] https://ci.debian.net/packages/r/r-bioc-dropletutils/testing/riscv64/
1154s > test_check("DropletUtils")
3081s [ FAIL 1 | WARN 461 | SKIP 0 | PASS 989 ]
3081s
3081s ══ Failed tests
════════════════════════════════════════════════════════════════
3081s ── Failure ('test-hashing.R:244:9'): edge cases are handled
correctly with combinatorial barcodes ──
3081s out$LogFC not identical to .compute_expected_lfc(SCALING, PSEUDO).
3081s Objects equal but not identical
3081s
3081s [ FAIL 1 | WARN 461 | SKIP 0 | PASS 989 ]
3084s Error: Test failures
--- End Message ---
--- Begin Message ---
Source: r-bioc-dropletutils
Source-Version: 1.24.0+ds-2
Done: Michael R. Crusoe <[email protected]>
We believe that the bug you reported is fixed in the latest version of
r-bioc-dropletutils, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael R. Crusoe <[email protected]> (supplier of updated r-bioc-dropletutils
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 07 Nov 2024 12:08:57 +0100
Source: r-bioc-dropletutils
Architecture: source
Version: 1.24.0+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <[email protected]>
Changed-By: Michael R. Crusoe <[email protected]>
Closes: 1082295
Changes:
r-bioc-dropletutils (1.24.0+ds-2) unstable; urgency=medium
.
* Team upload.
* Added patch to fix a test on riscv64. Closes: #1082295
* Drop another patch that was skipping some tests.
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