Your message dated Sat, 30 Nov 2024 13:49:37 +0000
with message-id <[email protected]>
and subject line Bug#1086565: fixed in genomicsdb 1.5.4-2
has caused the Debian Bug report #1086565,
regarding genomicsdb: FTBFS with fmtlib 10
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1086565: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1086565
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: genomicsdb
Version: 1.5.3-3
Severity: important
Tags: ftbfs
X-Debbugs-Cc: [email protected]
Control: block 1072674 by -1
Control: affects -1 src:fmtlib
Dear maintainers,
fmtlib 10 transition will start soon, your package genomicsdb FTBFS
with fmtlib 10.1.1+ds1-2 in experimental.
Here is some related log:
[ 40%] Building CXX object
src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o
cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/main && /usr/bin/c++
-DDUPLICATE_CELL_AT_END=1 -DGENOMICSDB_VERSION=\"1.5.3-SNAPSHOT-\"
-DSTRING_VIEW_FOUND=1 -D_FILE_OFFSET_BITS=64
-I/<<PKGBUILDDIR>>/genomicsdb-htslib -I/<<PKGBUILDDIR>>/genomicsdb-tiledb
-I/<<PKGBUILDDIR>>/genomicsdb-tiledb/core/include/c_api
-I/usr/lib/x86_64-linux-gnu/openmpi/include
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi
-I/<<PKGBUILDDIR>>/src/main/cpp/include/genomicsdb
-I/<<PKGBUILDDIR>>/src/main/cpp/include/loader
-I/<<PKGBUILDDIR>>/src/main/cpp/include/query_operations
-I/<<PKGBUILDDIR>>/src/main/cpp/include/utils
-I/<<PKGBUILDDIR>>/src/main/cpp/include/vcf
-I/<<PKGBUILDDIR>>/src/main/cpp/include/config
-I/<<PKGBUILDDIR>>/src/main/cpp/include/api
-I/<<PKGBUILDDIR>>/src/test/cpp/include
-I/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/resources -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection
-Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++17
-fstack-protector-strong -Wall -Wno-reorder -Wno-unknown-pragmas
-Wno-unused-variable -Wno-unused-but-set-variable -Wno-unused-result -fopenmp
-fPIC -MD -MT
src/main/CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o
-MF
CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o.d
-o
CMakeFiles/GenomicsDB_library_object_files.dir/__/resources/genomicsdb_export_config.pb.cc.o
-c
/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/resources/genomicsdb_export_config.pb.cc
In file included from /usr/include/spdlog/fmt/fmt.h:31,
from /usr/include/spdlog/common.h:50,
from /usr/include/spdlog/spdlog.h:12,
from
/<<PKGBUILDDIR>>/src/main/cpp/include/utils/genomicsdb_logger.h:41,
from
/<<PKGBUILDDIR>>/src/main/cpp/include/loader/tiledb_loader_file_base.h:31,
from
/<<PKGBUILDDIR>>/src/main/cpp/include/loader/tiledb_loader.h:29:
/usr/include/fmt/core.h: In instantiation of ‘constexpr
fmt::v10::detail::value<Context> fmt::v10::detail::make_arg(T&) [with bool
PACKED = true; Context = fmt::v10::basic_format_context<fmt::v10::appender,
char>; T = const VidFileTypeEnum; typename std::enable_if<PACKED, int>::type
<anonymous> = 0]’:
/usr/include/fmt/core.h:1808:51: required from ‘constexpr
fmt::v10::format_arg_store<Context, Args>::format_arg_store(T& ...) [with T =
{const VidFileTypeEnum}; Context =
fmt::v10::basic_format_context<fmt::v10::appender, char>; Args =
{VidFileTypeEnum}]’
1808 | data_{detail::make_arg<is_packed, Context>(args)...} {
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/include/fmt/core.h:1826:18: required from ‘void
spdlog::logger::log_(spdlog::source_loc, spdlog::level::level_enum,
spdlog::string_view_t, Args&& ...) [with Args = {const VidFileTypeEnum&};
spdlog::string_view_t = fmt::v10::basic_string_view<char>]’
1826 | return {args...};
| ^
/usr/include/spdlog/logger.h:90:13: required from ‘void
spdlog::logger::log(spdlog::source_loc, spdlog::level::level_enum,
fmt::v10::format_string<T ...>, Args&& ...) [with Args = {const
VidFileTypeEnum&}; fmt::v10::format_string<T ...> =
fmt::v10::basic_format_string<char, const VidFileTypeEnum&>]’
90 | log_(loc, lvl, details::to_string_view(fmt),
std::forward<Args>(args)...);
|
~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/spdlog/logger.h:96:12: required from ‘void
spdlog::logger::log(spdlog::level::level_enum, fmt::v10::format_string<T ...>,
Args&& ...) [with Args = {const VidFileTypeEnum&}; fmt::v10::format_string<T
...> = fmt::v10::basic_format_string<char, const VidFileTypeEnum&>]’
96 | log(source_loc{}, lvl, fmt, std::forward<Args>(args)...);
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/spdlog/logger.h:170:12: required from ‘void
spdlog::logger::error(fmt::v10::format_string<T ...>, Args&& ...) [with Args =
{const VidFileTypeEnum&}; fmt::v10::format_string<T ...> =
fmt::v10::basic_format_string<char, const VidFileTypeEnum&>]’
170 | log(level::err, fmt, std::forward<Args>(args)...);
| ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/main/cpp/include/utils/genomicsdb_logger.h:113:20:
required from ‘void Logger::fatal(const T&, const char*, const Args& ...) [with
T = VCF2TileDBException; Args = {VidFileTypeEnum}]’
113 | m_logger->error(fmt, args...);
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/main/cpp/src/loader/tiledb_loader.cc:252:17: required
from here
252 | logger.fatal(VCF2TileDBException(), "Unknown file type: {}",
file_info.m_type);
|
~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/spdlog/logger.h:374:75: in ‘constexpr’ expansion of
‘fmt::v10::make_format_args<>(args#0)’
/usr/include/fmt/core.h:1576:63: error:
‘fmt::v10::detail::type_is_unformattable_for<const VidFileTypeEnum, char> _’
has incomplete type
1576 | type_is_unformattable_for<T, typename Context::char_type> _;
| ^
/usr/include/fmt/core.h:1580:7: error: static assertion failed: Cannot format
an argument. To make type T formattable provide a formatter<T> specialization:
https://fmt.dev/latest/api.html#udt
1580 | formattable,
| ^~~~~~~~~~~
/usr/include/fmt/core.h:1580:7: note: ‘formattable’ evaluates to false
--
Thanks,
Shengqi Chen
--- End Message ---
--- Begin Message ---
Source: genomicsdb
Source-Version: 1.5.4-2
Done: Pierre Gruet <[email protected]>
We believe that the bug you reported is fixed in the latest version of
genomicsdb, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Pierre Gruet <[email protected]> (supplier of updated genomicsdb package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 30 Nov 2024 14:32:54 +0100
Source: genomicsdb
Architecture: source
Version: 1.5.4-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Pierre Gruet <[email protected]>
Closes: 1086565
Changes:
genomicsdb (1.5.4-2) unstable; urgency=medium
.
* Adding fmt formatters to build against fmtlib/10.x (Closes: #1086565)
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