Your message dated Mon, 09 Dec 2024 20:40:33 +0000
with message-id <[email protected]>
and subject line Bug#1085772: fixed in pbsuite 15.8.24+dfsg-8
has caused the Debian Bug report #1085772,
regarding pbsuite: Python SyntaxWarning
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1085772: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1085772
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: pbsuite
Version: 15.8.24+dfsg-7
User: [email protected]
Usertags: syntaxwarning
Hi Maintainer
The SyntaxWarning below were emitted when this package was tested with
pipuarts[1].
Regards
Graham
[1] https://piuparts.debian.org/sid/source/p/pbsuite.html
Setting up python3-pbsuite-utils (15.8.24+dfsg-7) ...
/usr/lib/python3/dist-packages/pbsuite/utils/BamStat.py:75:
SyntaxWarning: invalid escape sequence '\d'
for i in re.findall("\d+|\^?[ATCGN]+", md):
/usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:49:
SyntaxWarning: invalid escape sequence '\s'
splRE = re.compile("\s+")
/usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:60:
SyntaxWarning: invalid escape sequence '\s'
splRE = re.compile("\s+")
/usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:87:
SyntaxWarning: invalid escape sequence '\s'
self[key] = list(map(int, re.split("\s+", self[key].getvalue().strip())))
/usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:475:
SyntaxWarning: invalid escape sequence '\d'
subreadGrab = re.compile(".*/(\d+)_(\d+)$")
/usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:499:
SyntaxWarning: invalid escape sequence '\s'
data = re.split("\s+",line)
/usr/lib/python3/dist-packages/pbsuite/utils/FileHandlers.py:609:
SyntaxWarning: invalid escape sequence '\s'
data = re.split("\s+",line)
/usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:110:
SyntaxWarning: invalid escape sequence '\s'
METARE = re.compile(('##\s*(?P<key>\w+)\s*=\s*\<\s*ID\s*=\s*(?P<id>\w+)\s*'
/usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:111:
SyntaxWarning: invalid escape sequence '\s'
',\s*(Number\s*=\s*(?P<number>[0-9.])\s*,'
/usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:112:
SyntaxWarning: invalid escape sequence '\s'
'\s*Type\s*=\s*(?P<type>\w+)\s*,)?'
/usr/lib/python3/dist-packages/pbsuite/utils/VCFIO.py:113:
SyntaxWarning: invalid escape sequence '\s'
'\s*Description\s*=\s*"(?P<description>.*)"\s*\>\s*'),\
/usr/lib/python3/dist-packages/pbsuite/utils/jellyoutputrename.py:22:
SyntaxWarning: invalid escape sequence '\d'
regex = re.compile("ref\d{7}")
--- End Message ---
--- Begin Message ---
Source: pbsuite
Source-Version: 15.8.24+dfsg-8
Done: Andreas Tille <[email protected]>
We believe that the bug you reported is fixed in the latest version of
pbsuite, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated pbsuite package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 09 Dec 2024 20:44:30 +0100
Source: pbsuite
Architecture: source
Version: 15.8.24+dfsg-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1085772
Changes:
pbsuite (15.8.24+dfsg-8) unstable; urgency=medium
.
* Team upload.
* Fix Python3.12 string syntax
Closes: #1085772
* Standards-Version: 4.7.0 (routine-update)
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* No tab in license text (routine-update)
* Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
* autopkgtest:
- rename script to run-unit-test and install it as user example
- replace needs-recommends by recommended pbdagcon
- use default run-unit-test template
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