Your message dated Tue, 01 Jul 2025 10:49:31 +0000
with message-id <[email protected]>
and subject line Bug#1108325: fixed in dioptas 0.6.1-2
has caused the Debian Bug report #1108325,
regarding dioptas: Calibration fails with deprecated "np.NaN" command
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1108325: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1108325
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: dioptas
Version: 0.6.1-1
Severity: important
Tags: upstream
X-Debbugs-Cc: [email protected]
Dear Maintainer,
When attempting to run an integration of a 2D image, the program fails with
the message below in the error.log
Changing the "np.NaN" to "np.nan" in line 274 of CalibrationModel.py elimiates
the error
This may be due to the version of NumPy in trixie.
--------------------------------------------------------------------------------
2025-06-25, 16:11:34
--------------------------------------------------------------------------------
<class 'AttributeError'>:
`np.NaN` was removed in the NumPy 2.0 release. Use `np.nan` instead.
--------------------------------------------------------------------------------
File
"/usr/lib/python3/dist-packages/dioptas/controller/CalibrationController.py",
line 553, in calibrate
self.automatic_refinement()
~~~~~~~~~~~~~~~~~~~~~~~~~^^
File
"/usr/lib/python3/dist-packages/dioptas/controller/CalibrationController.py",
line 646, in automatic_refinement
self.model.calibration_model.search_peaks_on_ring(
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
0, delta_tth, intensity_min_factor, intensity_max, mask
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/usr/lib/python3/dist-packages/dioptas/model/CalibrationModel.py", line
274, in search_peaks_on_ring
sub_data[np.where(sub_data > upper_limit)] = np.NaN
^^^^^^
File "/usr/lib/python3/dist-packages/numpy/__init__.py", line 400, in
__getattr__
raise AttributeError(
...<3 lines>...
)
--------------------------------------------------------------------------------
Dioptas Version: 0.6.1
-- System Information:
Debian Release: 13.0
APT prefers testing-security
APT policy: (500, 'testing-security'), (500, 'testing')
Architecture: amd64 (x86_64)
Kernel: Linux 6.12.32-amd64 (SMP w/20 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages dioptas depends on:
ii libjs-jquery 3.6.1+dfsg+~3.5.14-1
ii libjs-mathjax 2.7.9+dfsg-1
ii libjs-sphinxdoc 8.1.3-5
ii libjs-underscore 1.13.4~dfsg+~1.11.4-3
ii python3 [python3-supported-max] 3.13.3-1
ii python3-extra-data 1.20.0-1
ii python3-fabio 2024.9.0-7
ii python3-h5py 3.13.0-1
ii python3-hdf5plugin 5.1.0-1
ii python3-lmfit 1.3.3-4
ii python3-numexpr 2.10.2-1+b2
ii python3-numpy 1:2.2.4+ds-1
ii python3-opengl 3.1.9+dfsg-1.1
ii python3-pandas 2.2.3+dfsg-9
ii python3-psutil 7.0.0-2
ii python3-pycifrw 4.4.6-4+b1
ii python3-pyepics 3.5.7+ds-1
ii python3-pyfai 2025.03-1
ii python3-pyqt6 6.9.0-2
ii python3-pyqtgraph 0.13.7-5
ii python3-qt-material 2.14-2
ii python3-qtpy 2.4.3-1
ii python3-qtpy-pyqt5 2.4.3-1
ii python3-scipy 1.15.3-1
ii python3-skimage 0.25.2-2
ii python3-watchdog 6.0.0-1
ii python3-xypattern 1.1.2-5+b1
dioptas recommends no packages.
dioptas suggests no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: dioptas
Source-Version: 0.6.1-2
Done: Roland Mas <[email protected]>
We believe that the bug you reported is fixed in the latest version of
dioptas, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Roland Mas <[email protected]> (supplier of updated dioptas package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 01 Jul 2025 12:32:08 +0200
Source: dioptas
Architecture: source
Version: 0.6.1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian PaN Maintainers
<[email protected]>
Changed-By: Roland Mas <[email protected]>
Closes: 1108325
Changes:
dioptas (0.6.1-2) unstable; urgency=medium
.
* Bug fix: "Calibration fails with deprecated "np.NaN"
command", thanks to Carlo Segre (Closes: #1108325).
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