Your message dated Fri, 01 Aug 2025 13:33:59 +0000
with message-id <[email protected]>
and subject line Bug#1109688: fixed in aegean 0.16.0+dfsg-5~exp0
has caused the Debian Bug report #1109688,
regarding aegean: please enable build for loong64
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1109688: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1109688
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: aegean
Version: 0.16.0+dfsg-4
Severity: normal
Tags: patch
User: [email protected]
Usertags: loong64
Dear maintainers,
The status of aegean is Auto-Not-For-Us on loong64.
We need to append loong64 support in d/control and add loongarch64
support in Makefile.
Please consider the patch I attached for aegean.
Based on attached patch, I have built aegean successfully on locally.
```
......
dh_builddeb
dpkg-deb: building package 'aegean' in
'../aegean_0.16.0+dfsg-4+loong64_loong64.deb'.
dpkg-deb: building package 'aegean-dbgsym' in
'../aegean-dbgsym_0.16.0+dfsg-4+loong64_loong64.deb'.
dpkg-genbuildinfo -O../aegean_0.16.0+dfsg-4+loong64_loong64.buildinfo
dpkg-genchanges -O../aegean_0.16.0+dfsg-4+loong64_loong64.changes
```
Please enable build for loong64 after Debian 13 released.
Your opinions are welcome.
Best regards,
Dandan Zhang
diff -Nru aegean-0.16.0+dfsg/debian/changelog
aegean-0.16.0+dfsg/debian/changelog
--- aegean-0.16.0+dfsg/debian/changelog 2024-04-01 17:49:51.000000000 +0000
+++ aegean-0.16.0+dfsg/debian/changelog 2025-07-22 03:38:04.000000000 +0000
@@ -1,3 +1,10 @@
+aegean (0.16.0+dfsg-4+loong64) unstable; urgency=medium
+
+ * Append loong64 support in d/control.
+ * Do not use -m64 CFLAGS on loongarch64.
+
+ -- Dandan Zhang <[email protected]> Tue, 22 Jul 2025 11:38:04 +0800
+
aegean (0.16.0+dfsg-4) unstable; urgency=medium
* Remove explicit runtime dependency on libgenometools0.
diff -Nru aegean-0.16.0+dfsg/debian/control aegean-0.16.0+dfsg/debian/control
--- aegean-0.16.0+dfsg/debian/control 2024-04-01 17:49:51.000000000 +0000
+++ aegean-0.16.0+dfsg/debian/control 2025-07-22 03:17:38.000000000 +0000
@@ -14,7 +14,7 @@
Homepage: https://standage.github.io/AEGeAn
Package: aegean
-Architecture: amd64 arm64 armel armhf i386 mipsel powerpc ppc64el s390x
hurd-i386 kfreebsd-amd64 kfreebsd-i386 ppc64 x32
+Architecture: amd64 arm64 armel armhf i386 mipsel powerpc ppc64el s390x
hurd-i386 kfreebsd-amd64 kfreebsd-i386 ppc64 x32 loong64
Depends: ${shlibs:Depends},
${misc:Depends},
libjs-jquery,
diff -Nru
aegean-0.16.0+dfsg/debian/patches/aegean-add-loongarch64-support.patch
aegean-0.16.0+dfsg/debian/patches/aegean-add-loongarch64-support.patch
--- aegean-0.16.0+dfsg/debian/patches/aegean-add-loongarch64-support.patch
1970-01-01 00:00:00.000000000 +0000
+++ aegean-0.16.0+dfsg/debian/patches/aegean-add-loongarch64-support.patch
2025-07-22 03:37:07.000000000 +0000
@@ -0,0 +1,14 @@
+Description: Do not use -m64 CFLAGS on loongarch64
+Last-Update: 2025-07-22
+
+--- aegean-0.16.0+dfsg.orig/Makefile
++++ aegean-0.16.0+dfsg/Makefile
+@@ -45,7 +45,7 @@ ifeq ($(optimize),yes)
+ CFLAGS += -O3
+ endif
+ ifneq ($(64bit),no)
+- ifeq (,$(filter $(MACHINE),ia64 alpha mips64 mips64el aarch64))
++ ifeq (,$(filter $(MACHINE),ia64 alpha mips64 mips64el aarch64 loongarch64))
+ CFLAGS += -m64
+ GTFLAGS += 64bit=yes
+ endif
diff -Nru aegean-0.16.0+dfsg/debian/patches/series
aegean-0.16.0+dfsg/debian/patches/series
--- aegean-0.16.0+dfsg/debian/patches/series 2019-09-09 16:35:41.000000000
+0000
+++ aegean-0.16.0+dfsg/debian/patches/series 2025-07-22 03:36:18.000000000
+0000
@@ -5,3 +5,4 @@
follow_links
includepaths
2to3.patch
+aegean-add-loongarch64-support.patch
--- End Message ---
--- Begin Message ---
Source: aegean
Source-Version: 0.16.0+dfsg-5~exp0
Done: Sascha Steinbiss <[email protected]>
We believe that the bug you reported is fixed in the latest version of
aegean, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Sascha Steinbiss <[email protected]> (supplier of updated aegean package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 01 Aug 2025 14:42:11 +0200
Source: aegean
Binary: aegean aegean-dbgsym
Architecture: source amd64
Version: 0.16.0+dfsg-5~exp0
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Sascha Steinbiss <[email protected]>
Description:
aegean - integrated genome analysis toolkit
Closes: 1096281 1109688
Changes:
aegean (0.16.0+dfsg-5~exp0) experimental; urgency=medium
.
[ Dandan Zhang ]
* Append loong64 support in d/control.
Closes: #1109688
* Do not use -m64 CFLAGS on loongarch64.
.
[ Sascha Steinbiss ]
* Bump Standards-Version.
* Fix building with GCC 15.
Closes: #1096281
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