Your message dated Tue, 23 Sep 2025 20:41:00 +0000
with message-id <[email protected]>
and subject line Bug#1097934: fixed in staden 2.0.0+b11-7
has caused the Debian Bug report #1097934,
regarding staden: ftbfs with GCC-15
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1097934: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1097934
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:staden
Version: 2.0.0+b11-5
Severity: important
Tags: sid forky
User: [email protected]
Usertags: ftbfs-gcc-15

[This bug is NOT targeted to the upcoming trixie release]

Please keep this issue open in the bug tracker for the package it
was filed for.  If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.

The package fails to build in a test rebuild on at least amd64 with
gcc-15/g++-15, but succeeds to build with gcc-14/g++-14. The
severity of this report will be raised before the forky release.

The full build log can be found at:
http://qa-logs.debian.net/2025/02/16/amd64exp/staden_2.0.0+b11-5_unstable_gccexp.log.gz
The last lines of the build log are at the end of this report.

To build with GCC 15, either set CC=gcc-15 CXX=g++-15 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.

  apt-get -t=experimental install g++ 

GCC 15 now defaults to the C23/C++23 standards, exposing many FTBFS.
Other Common build failures are new warnings resulting in build failures
with -Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-15/porting_to.html

[...]
   21 |                                    expand_6,
      |                                    ^~~~~~~~
align.c:21:36: note: (near initialization for ‘expand_arr[1]’)
align_lib_old.h:11:13: note: ‘expand_6’ declared here
   11 | extern void expand_6(char *A, FastInt (*B)[6], int M, int N,
      |             ^~~~~~~~
align.c:22:36: error: initialization of ‘void (*)(void)’ from incompatible 
pointer type ‘void (*)(char *, FastInt (*)[6], int,  int,  char *, FastInt 
(*)[6], int *, int *, FastInt *, int)’ {aka ‘void (*)(char *, int (*)[6], int,  
int,  char *, int (*)[6], int *, int *, int *, int)’} 
[-Wincompatible-pointer-types]
   22 |                                    expand_6,
      |                                    ^~~~~~~~
align.c:22:36: note: (near initialization for ‘expand_arr[2]’)
align_lib_old.h:11:13: note: ‘expand_6’ declared here
   11 | extern void expand_6(char *A, FastInt (*B)[6], int M, int N,
      |             ^~~~~~~~
align.c:23:36: error: initialization of ‘void (*)(void)’ from incompatible 
pointer type ‘void (*)(char *, char *, int,  int,  char *, char *, int *, int 
*, FastInt *, int)’ {aka ‘void (*)(char *, char *, int,  int,  char *, char *, 
int *, int *, int *, int)’} [-Wincompatible-pointer-types]
   23 |                                    expand};
      |                                    ^~~~~~
align.c:23:36: note: (near initialization for ‘expand_arr[3]’)
align_lib_old.h:8:13: note: ‘expand’ declared here
    8 | extern void expand(char *A, char *B, int M, int N,
      |             ^~~~~~
align_sv.c: In function ‘align’:
align_sv.c:55:16: warning: old-style function definition 
[-Wold-style-definition]
   55 | static FastInt align(A,B,M,N,tb,te,topr,botr,lc,rc)
      |                ^~~~~
align.c: In function ‘calignm’:
align.c:120:14: error: too many arguments to function ‘align_arr[ajob]’; 
expected 0, have 14
  120 |     retval = align_arr[ajob](seq1, seq2, (FastInt)len1, (FastInt)len2,
      |              ^~~~~~~~~       ~~~~
align.c:134:13: error: too many arguments to function ‘expand_arr[ajob]’; 
expected 0, have 10
  134 |             expand_arr[ajob](seq1, seq2, len1, len2,
      |             ^~~~~~~~~~       ~~~~
align.c: In function ‘cdisplay’:
align.c:169:5: error: too many arguments to function ‘display_arr[job & 15]’; 
expected 0, have 7
  169 |     display_arr[job & ALIGN_J_MASK](seq1, seq2, len1, len2,
      |     ^~~~~~~~~~~                     ~~~~
align.c: In function ‘cexpand’:
align.c:188:5: error: too many arguments to function ‘expand_arr[job & 15]’; 
expected 0, have 10
  188 |     expand_arr[job & ALIGN_J_MASK](seq1, seq2, len1, len2,
      |     ^~~~~~~~~~                     ~~~~
align_sv.c: In function ‘align_sv’:
align_sv.c:339:9: warning: old-style function definition 
[-Wold-style-definition]
  339 | FastInt align_sv(A,B,M,N,low,up,W,G,H,S,s1,s2,e1,e2)
      |         ^~~~~~~~
align_sv.c: In function ‘display_sv’:
align_sv.c:456:6: warning: old-style function definition 
[-Wold-style-definition]
  456 | void display_sv(A,B,M,N,S,AP,BP)
      |      ^~~~~~~~~~
make[2]: *** 
[/build/reproducible-path/staden-2.0.0+b11/./seq_utils/../global.mk:388: 
align.o] Error 1
make[2]: *** Waiting for unfinished jobs....
renz_utils.c: In function ‘SetREnzColour’:
renz_utils.c:1049:35: warning: ‘__builtin___sprintf_chk’ writing a terminating 
nul past the end of the destination [-Wformat-overflow=]
 1049 |     sprintf(colour, "#%02x%02x%02x", r, g, b);
      |                                   ^
In file included from /usr/include/stdio.h:970,
                 from renz_utils.c:3:
In function ‘sprintf’,
    inlined from ‘SetREnzColour’ at renz_utils.c:1049:5:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: 
‘__builtin___sprintf_chk’ output between 8 and 26 bytes into a destination of 
size 7
   30 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   31 |                                   __glibc_objsize (__s), __fmt,
      |                                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   32 |                                   __va_arg_pack ());
      |                                   ~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11/seq_utils'
make[1]: *** [Makefile:174: seq_utils] Error 2
make[1]: Leaving directory '/build/reproducible-path/staden-2.0.0+b11'
dh_auto_build: error: make -j8 returned exit code 2
make: *** [debian/rules:12: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2

--- End Message ---
--- Begin Message ---
Source: staden
Source-Version: 2.0.0+b11-7
Done: Étienne Mollier <[email protected]>

We believe that the bug you reported is fixed in the latest version of
staden, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated staden package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


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Hash: SHA512

Format: 1.8
Date: Tue, 23 Sep 2025 21:54:54 +0200
Source: staden
Architecture: source
Version: 2.0.0+b11-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1097934
Changes:
 staden (2.0.0+b11-7) unstable; urgency=medium
 .
   * d/rules: fortify sources.
   * d/control: add myself to uploaders.
   * d/control: remove redundant Rules-Requires-Root.
   * d/watch: bump to uscan v5 watch file.
   * d/u/metadata: fix typoed Bug fields.
   * d/rules: fix build failure with gcc-15.
     Thanks to Adrian Bunk (Closes: #1097934)
 .
 staden (2.0.0+b11-6) experimental; urgency=medium
 .
   * Team upload.
 .
   [ Andreas Tille ]
   * Remove Tim Booth <[email protected]> since address is bouncing
     (Thank you for your work on this package, Tim)
 .
   [ Harish chavre ]
   * add autopkgtest
 .
   [ Étienne Mollier ]
   * d/control: declare compliance to standards version 4.7.2.
   * d/p/*.patch: normalize timestamps.
   * d/salsa-ci.yml: new: activate continuous integration.
Checksums-Sha1:
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 a2bcf393a941bb0818a9925e61befcac37695b4f 18032 staden_2.0.0+b11-7.debian.tar.xz
Checksums-Sha256:
 69b40d8bcb5578b2922d265836829a2e21f9cb7b530e7ed12607c1f54df87724 2403 
staden_2.0.0+b11-7.dsc
 561471596706f901760ac9e8effda8a4fe721dae89d12f50e20e241cf09a6c6d 18032 
staden_2.0.0+b11-7.debian.tar.xz
Files:
 b46acaf63bbb64fc94f5c8b0417c71e8 2403 science optional staden_2.0.0+b11-7.dsc
 f4f6c45121d1cf7da4bd13c86d27adf3 18032 science optional 
staden_2.0.0+b11-7.debian.tar.xz

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