Your message dated Wed, 01 Oct 2025 09:04:19 +0000
with message-id <[email protected]>
and subject line Bug#1116738: fixed in gemmi 0.7.1+ds-2
has caused the Debian Bug report #1116738,
regarding gemmi: FTBFS with the nocheck build profile
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1116738: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1116738
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:gemmi
Version: 0.7.1+ds-1
Severity: important
Tags: forky sid ftbfs
User: [email protected]
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/Nocheck
(It's a wiki, so you are welcome to contribute)
[ Note: This is RC, but I will wait at least two weeks before raising
the severities, there are a lot of gcc-15 and CMake 4 bugs open now ].
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:gemmi, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem cmake
dh_auto_clean -O--buildsystem=cmake
[... snipped ...]
STANDALONE_PYTHON_MODULE:BOOL=ON
//Strip symbols from program
STRIP_BINARY:BOOL=OFF
//Build Fortran bindings
USE_FORTRAN:BOOL=OFF
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//Build Python bindings
USE_PYTHON:BOOL=ON
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benchmark_DIR:PATH=benchmark_DIR-NOTFOUND
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gemmi_BINARY_DIR:STATIC=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
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dh_auto_configure: error: cd obj-x86_64-linux-gnu &&
PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr
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-DBUILD_TESTING:BOOL=OFF -DBUILD_SHARED_LIBS=OFF -DUSE_PYTHON=ON .. returned
exit code 1
make[1]: *** [debian/rules:16: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:12: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: gemmi
Source-Version: 0.7.1+ds-2
Done: Andrius Merkys <[email protected]>
We believe that the bug you reported is fixed in the latest version of
gemmi, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <[email protected]> (supplier of updated gemmi package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 01 Oct 2025 04:45:14 -0400
Source: gemmi
Architecture: source
Version: 0.7.1+ds-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Andrius Merkys <[email protected]>
Closes: 1116738
Changes:
gemmi (0.7.1+ds-2) unstable; urgency=medium
.
* python3-nanobind is a hard dependency (Closes: #1116738).
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