Your message dated Mon, 06 Oct 2025 16:50:25 +0000
with message-id <[email protected]>
and subject line Bug#1116850: fixed in python-bx 0.13.0-2
has caused the Debian Bug report #1116850,
regarding python-bx: FTBFS with the nocheck build profile
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1116850: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1116850
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:python-bx
Version: 0.13.0-1
Severity: important
Tags: forky sid ftbfs
User: [email protected]
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/Nocheck
(It's a wiki, so you are welcome to contribute)
[ Note: This is RC, but I will wait at least two weeks before raising
the severities, there are a lot of gcc-15 and CMake 4 bugs open now ].
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-bx, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
debian/rules execute_after_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find -name "*.pyx" | sed 's/pyx$/c/' | xargs rm -f
grep -rli "Generated by Cython" lib/ | xargs -r rm
rm -rf lib/bx_python.egg-info
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build"
module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation
--wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_bx-python
* Building wheel...
Traceback (most recent call last):
File "<string>", line 26, in main
ModuleNotFoundError: No module named 'numpy'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File
"/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py",
line 389, in <module>
main()
~~~~^^
File
"/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py",
line 373, in main
json_out["return_val"] = hook(**hook_input["kwargs"])
~~~~^^^^^^^^^^^^^^^^^^^^^^^^
File
"/usr/lib/python3/dist-packages/pyproject_hooks/_in_process/_in_process.py",
line 280, in build_wheel
return _build_backend().build_wheel(
~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
wheel_directory, config_settings, metadata_directory
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 435, in
build_wheel
return _build(['bdist_wheel'])
File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 426, in
_build
return self._build_with_temp_dir(
~~~~~~~~~~~~~~~~~~~~~~~~~^
cmd,
^^^^
...<3 lines>...
self._arbitrary_args(config_settings),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 407, in
_build_with_temp_dir
self.run_setup()
~~~~~~~~~~~~~~^^
File "/usr/lib/python3/dist-packages/setuptools/build_meta.py", line 320, in
run_setup
exec(code, locals())
~~~~^^^^^^^^^^^^^^^^
File "<string>", line 150, in <module>
File "<string>", line 31, in main
Exception: numpy must be installed to build: No module named 'numpy'
ERROR Backend subprocess exited when trying to invoke build_wheel
E: pybuild pybuild:389: build: plugin pyproject failed with: exit code=1:
python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_bx-python
dh_auto_build: error: pybuild --build -i python{version} -p 3.13 returned exit
code 13
make: *** [debian/rules:13: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: python-bx
Source-Version: 0.13.0-2
Done: Santiago Vila <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-bx, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <[email protected]> (supplier of updated python-bx package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 06 Oct 2025 16:40:00 +0200
Source: python-bx
Architecture: source
Version: 0.13.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Santiago Vila <[email protected]>
Closes: 1116850
Changes:
python-bx (0.13.0-2) unstable; urgency=medium
.
* Team upload.
* Drop <!nocheck> from python3-numpy in BD. Closes: #1116850.
* d/control: Add build-dependency on python3-numpy-dev (lintian error).
* d/control: Drop "Rules-Requires-Root: no", it's the default.
* d/control: Drop "Priority: optional", it's the default.
* d/control: Update standards-version.
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