Your message dated Mon, 06 Oct 2025 12:05:45 +0000
with message-id <[email protected]>
and subject line Bug#1116912: fixed in seqmagick 0.8.6-4
has caused the Debian Bug report #1116912,
regarding seqmagick: FTBFS with the nocheck build profile
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1116912: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1116912
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:seqmagick
Version: 0.8.6-3
Severity: important
Tags: forky sid ftbfs
User: [email protected]
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/Nocheck
(It's a wiki, so you are welcome to contribute)
[ Note: This is RC, but I will wait at least two weeks before raising
the severities, there are a lot of gcc-15 and CMake 4 bugs open now ].
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:seqmagick, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules execute_before_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p seqmagick/data
echo 0.8.6 > seqmagick/data/ver
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_clean -O--buildsystem=pybuild
I: pybuild base:311: python3.13 setup.py clean
/usr/lib/python3/dist-packages/setuptools/__init__.py:94: _DeprecatedInstaller:
setuptools.installer and fetch_build_eggs are deprecated.
!!
********************************************************************************
Requirements should be satisfied by a PEP 517 installer.
If you are using pip, you can try `pip install --use-pep517`.
********************************************************************************
!!
dist.fetch_build_eggs(dist.setup_requires)
/usr/bin/python3.13: No module named pip
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/setuptools/installer.py", line 107, in
_fetch_build_egg_no_warn
subprocess.check_call(cmd)
~~~~~~~~~~~~~~~~~~~~~^^^^^
File "/usr/lib/python3.13/subprocess.py", line 419, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/bin/python3.13', '-m', 'pip',
'--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmppbpwl2_3',
'--quiet', 'pytest>=6.0']' returned non-zero exit status 1.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/setup.py", line 18, in <module>
setup(name='seqmagick',
~~~~~^^^^^^^^^^^^^^^^^^
version=__version__,
^^^^^^^^^^^^^^^^^^^^
...<27 lines>...
],
^^
license="GPL V3")
^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 116, in
setup
_install_setup_requires(attrs)
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 89, in
_install_setup_requires
_fetch_build_eggs(dist)
~~~~~~~~~~~~~~~~~^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 94, in
_fetch_build_eggs
dist.fetch_build_eggs(dist.setup_requires)
~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/dist.py", line 768, in
fetch_build_eggs
return _fetch_build_eggs(self, requires)
File "/usr/lib/python3/dist-packages/setuptools/installer.py", line 44, in
_fetch_build_eggs
resolved_dists = pkg_resources.working_set.resolve(
_reqs.parse(requires, pkg_resources.Requirement), # required for
compatibility
installer=partial(_fetch_build_egg_no_warn, dist), # avoid warning
twice
replace_conflicting=True,
)
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 893, in
resolve
dist = self._resolve_dist(
req, best, replace_conflicting, env, installer, required_by, to_activate
)
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 929, in
_resolve_dist
dist = best[req.key] = env.best_match(
~~~~~~~~~~~~~~^
req, ws, installer, replace_conflicting=replace_conflicting
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1267,
in best_match
return self.obtain(req, installer)
~~~~~~~~~~~^^^^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1303,
in obtain
return installer(requirement) if installer else None
~~~~~~~~~^^^^^^^^^^^^^
File "/usr/lib/python3/dist-packages/setuptools/installer.py", line 109, in
_fetch_build_egg_no_warn
raise DistutilsError(str(e)) from e
distutils.errors.DistutilsError: Command '['/usr/bin/python3.13', '-m', 'pip',
'--disable-pip-version-check', 'wheel', '--no-deps', '-w', '/tmp/tmppbpwl2_3',
'--quiet', 'pytest>=6.0']' returned non-zero exit status 1.
E: pybuild pybuild:389: clean: plugin distutils failed with: exit code=1:
python3.13 setup.py clean
dh_auto_clean: error: pybuild --clean -i python{version} -p 3.13 returned exit
code 13
make: *** [debian/rules:6: clean] Error 25
dpkg-buildpackage: error: debian/rules clean subprocess returned exit status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: seqmagick
Source-Version: 0.8.6-4
Done: Santiago Vila <[email protected]>
We believe that the bug you reported is fixed in the latest version of
seqmagick, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Santiago Vila <[email protected]> (supplier of updated seqmagick package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 06 Oct 2025 13:20:00 +0200
Source: seqmagick
Architecture: source
Version: 0.8.6-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Santiago Vila <[email protected]>
Closes: 1116912
Changes:
seqmagick (0.8.6-4) unstable; urgency=medium
.
* Team upload.
* Drop <!nocheck> from python3-pytest. Closes: #1116912.
* Drop "Rules-Requires-Root: no", it's now the default.
* Drop "Priority: optional", it's now the default.
* Update standards-version.
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