Your message dated Tue, 04 Nov 2025 21:07:40 +0000
with message-id <[email protected]>
and subject line Bug#1120068: fixed in python-biom-format 2.1.17-1
has caused the Debian Bug report #1120068,
regarding python-biom-format: please make the build reproducible
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
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--
1120068: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1120068
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: python-biom-format
Version: 2.1.16-1
Severity: wishlist
Tags: patch
User: [email protected]
Usertags: nocheck
X-Debbugs-Cc: [email protected]
Hi,
Whilst working on the Reproducible Builds effort [0], we noticed that
python-biom-format could not be built reproducibly.
This is because it generates different content whether the tests are
run, and, relatedly, it installs an "examples/" directory directly
under dist-packages.
I believe it is this line that is the 'cause':
export PYBUILD_BEFORE_TEST=cp -r {dir}/examples {build_dir}
... and a patch is attached that cleans up with:
export PYBUILD_AFTER_TEST=rm -rf {build_dir}/examples
[0] https://reproducible-builds.org/
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
--- a/debian/rules 2025-11-04 10:53:00.349787676 -0800
--- b/debian/rules 2025-11-04 10:59:24.498766256 -0800
@@ -10,6 +10,7 @@
export examplepkg=python-$(PYBUILD_NAME)-examples
export PYBUILD_AFTER_INSTALL_python3=dh_numpy3
export PYBUILD_BEFORE_TEST=cp -r {dir}/examples {build_dir}
+export PYBUILD_AFTER_TEST=rm -rf {build_dir}/examples
## When trying better hardening the build fails
# export DEB_BUILD_MAINT_OPTIONS = hardening=+all
--- End Message ---
--- Begin Message ---
Source: python-biom-format
Source-Version: 2.1.17-1
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-biom-format, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated python-biom-format
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Tue, 04 Nov 2025 21:39:49 +0100
Source: python-biom-format
Architecture: source
Version: 2.1.17-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1102990 1120068
Changes:
python-biom-format (2.1.17-1) unstable; urgency=medium
.
[ Étienne Mollier ]
* New upstream version 2.1.17
* d/watch: converto to v5 Github template.
* d/copyright: bump upstream copyright year.
* d/control: drop redundant Rules-Requires-Root: no.
* d/control: declare compliance to standards version 4.7.2.
* d/copyright: remove reference to the old fsf address.
* d/patches/*: normalize Last-Update timestamps.
* d/{rules,control}: streamline dh_numpy3 integration.
This addresses supplemental comments in #1102990.
.
[ Chris Lamb ]
* d/rules: remove examples from dist-packages.
This makes the build reproducible. (Closes: #1120068, #1102990)
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