Your message dated Tue, 24 Feb 2026 23:18:13 +0000
with message-id <[email protected]>
and subject line Bug#1128608: fixed in lintian-brush 0.168
has caused the Debian Bug report #1128608,
regarding lintian-brush: unwanted changes in d/copyright, breaking changes in
d/rules
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1128608: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1128608
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: lintian-brush
Version: 0.167
Severity: normal
X-Debbugs-Cc: [email protected]
Hi,
please check
$ gbp clone salsa:med-team/murasaki
$ lintian-brush
It does several unwanted changes
1. git show 4475fbd1886c5189d234a154520ef8d07eab0bf1q
commit 4475fbd1886c5189d234a154520ef8d07eab0bf1
Author: Andreas Tille <[email protected]>
Date: Sat Feb 21 21:06:35 2026 +0100
Drop use of autotools-dev debhelper.
Changes-By: lintian-brush
Fixes: lintian: debhelper-tools-from-autotools-dev-are-deprecated
See-also:
https://lintian.debian.org/tags/debhelper-tools-from-autotools-dev-are-deprecated.html
Fixes: lintian: debhelper-tools-from-autotools-dev-are-deprecated
See-also:
https://lintian.debian.org/tags/debhelper-tools-from-autotools-dev-are-deprecated.html
Fixes: lintian: debhelper-tools-from-autotools-dev-are-deprecated
See-also:
https://lintian.debian.org/tags/debhelper-tools-from-autotools-dev-are-deprecated.html
diff --git a/debian/rules b/debian/rules
index 16ebcac..33ccb24 100755
--- a/debian/rules
+++ b/debian/rules
@@ -16,7 +16,7 @@ export DEB_BUILD_MAINT_OPTIONS = hardening=+all
override_dh_auto_build:
dh_auto_build -- USE_MPI=YES
for bin in geneparse mbfa murasaki cgr-* testeco align-* ; do \
- mv $${bin} $${bin}-mpi ; \
+ mv $${bin} $${bin}-mpi ; \
done
make clean
dh_auto_build -- USE_MPI=NO
@@ -27,14 +27,14 @@ override_dh_installman-indep:
mkdir -p $(CMANDIR)
for pscript in $(DEBMEDBIN)/* ; do \
pod2man $${pscript} > $(CMANDIR)/`basename $${pscript}`.1 ; \
- done
+ pod2man $${pscript} > $(CMANDIR)/`basename $${pscript}`.1 ; \
find $(CMANDIR) -empty -delete
override_dh_installman-arch:
dh_installman -a
mkdir -p $(MMANDIR)
for man in $(MANDIR)/*.1 ; do \
- cp -a $${man} $(MMANDIR)/`basename $${man} .1`-mpi.1 ; \
+ cp -a $${man} $(MMANDIR)/`basename $${man} .1`-mpi.1 ; \
done
override_dh_install-arch:
--> The changes have nothing to do with the changelog. Its some reformatting
and even worse it contains a breaking change by removing the "done" in the
shell for loop.
2. Changing the sequence of paragraphs might be sensible in general - but I
think
the debian/* section should remain at the end in any case.
$ git show f8c5479710ba99f564487c8ee678dc86797cf0d7
commit f8c5479710ba99f564487c8ee678dc86797cf0d7
Author: Andreas Tille <[email protected]>
Date: Sat Feb 21 21:06:36 2026 +0100
Reorder Files paragraphs in debian/copyright by directory depth.
Changes-By: lintian-brush
Fixes: lintian: globbing-patterns-out-of-order
See-also:
https://lintian.debian.org/tags/globbing-patterns-out-of-order.html
diff --git a/debian/copyright b/debian/copyright
index e21221a..799dae7 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -6,10 +6,6 @@ Files: *
Copyright: © 2006-2010 Keio University; Kris Popendorf
License: GPL-3+
-Files: perlmodules/Murasaki/K* perlmodules/Murasaki/O* perlmodules/Murasaki/T*
-Copyright: © 2006-2010 Keio University; Kris Popendorf
-License: GPL-2+
-
Files: debian/*
Copyright: © 2008-2015 Andreas Tille <[email protected]>
License: GPL-3+
@@ -28,6 +24,10 @@ Comment:
[1]:
https://ftp.ncbi.nlm.nih.gov/genomes/HUMAN_MICROBIOM/Bacteria/Acinetobacter_lwoffii_SH145_uid38343
[2]: https://ftp.ncbi.nlm.nih.gov/README.ftp
+Files: perlmodules/Murasaki/K* perlmodules/Murasaki/O* perlmodules/Murasaki/T*
+Copyright: © 2006-2010 Keio University; Kris Popendorf
+License: GPL-2+
+
License: GPL-3+
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
3. The change
Set upstream metadata fields: Archive.
is fine.
4. That's another instance of the problem reported in #1128572
$ git show
commit baa96c345cf256a19cd1dff2106c32249b292af2 (HEAD -> master)
Author: Andreas Tille <[email protected]>
Date: Sat Feb 21 21:09:06 2026 +0100
Remove duplicate values for fields Entry, Entry, Name in
debian/upstream/metadata.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-yaml-invalid
See-also:
https://lintian.debian.org/tags/upstream-metadata-yaml-invalid.html
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
index 129dad8..7e019f4 100644
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -1,25 +1,22 @@
Archive: SourceForge
Reference:
Author: >
- Kris Popendorf and Hachiya Tsuyoshi and Yasunori Osana and
- Yasubumi Sakakibara
- Title: >
- Murasaki: A Fast, Parallelizable Algorithm to Find Anchors
- from Multiple Genomes
- Journal: PLOS one
- Year: 2010
- Volume: 5
- Number: 9
- Pages: e12651
- DOI: 10.1371/journal.pone.0012651
- PMID: 20885980
- URL: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0012651
- ePrint: "https://www.plosone.org/article/fetchObject.action?uri=info:doi/\
- 10.1371/journal.pone.0012651&representation=PDF"
+ Kris Popendorf and Hachiya Tsuyoshi and Yasunori Osana and:
+ Yasubumi Sakakibara:
+ Title: >
+ Murasaki: A Fast, Parallelizable Algorithm to Find Anchors
+ from Multiple Genomes:
+ Journal: PLOS one
+ Year: 2010
+ Volume: 5
+ Number: 9
+ Pages: e12651
+ DOI: 10.1371/journal.pone.0012651
+ PMID: 20885980
+ URL:
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0012651
+ ePrint: https://www.plosone.org/article/fetchObject.action?uri=info:doi/\
+ 10.1371/journal.pone.0012651&representation=PDF
Registry:
- - Name: OMICtools
- Entry: OMICS_11714
- - Name: SciCrunch
- Entry: NA
- - Name: bio.tools
- Entry: NA
+- Name: OMICtools
+Entry: OMICS_11714
+Name: SciCrunch
Hope this helps to enhance lintian-brush
Andreas.
-- System Information:
Debian Release: forky/sid
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (50, 'buildd-unstable'), (1,
'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 6.18.12+deb14-amd64 (SMP w/8 CPU threads; PREEMPT)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages lintian-brush depends on:
ii devscripts 2.26.5
ii libc6 2.42-13
ii libgcc-s1 15.2.0-13
ii libgmp10 2:6.3.0+dfsg-5+b1
ii libhogweed6t64 3.10.2-1
ii liblzma5 5.8.2-2
ii libnettle8t64 3.10.2-1
ii libpython3.13 3.13.12-1
ii libssl3t64 3.5.5-1
ii python3-breezy 3.3.21-1
Versions of packages lintian-brush recommends:
ii debhelper 13.30
ii decopy 0.2.4.9-0.1
ii dos2unix 7.5.2-1
ii gpg 2.4.8-5
ii lintian 2.129.0
Versions of packages lintian-brush suggests:
ii brz-debian 2.8.80
ii git-buildpackage 0.9.39
ii po-debconf 1.0.22
ii postgresql-common 289
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: lintian-brush
Source-Version: 0.168
Done: Jelmer Vernooij <[email protected]>
We believe that the bug you reported is fixed in the latest version of
lintian-brush, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Jelmer Vernooij <[email protected]> (supplier of updated lintian-brush package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 16 Feb 2026 11:11:29 +0000
Source: lintian-brush
Architecture: source
Version: 0.168
Distribution: unstable
Urgency: medium
Maintainer: Jelmer Vernooij <[email protected]>
Changed-By: Jelmer Vernooij <[email protected]>
Closes: 1110964 1128193 1128553 1128554 1128555 1128557 1128608
Changes:
lintian-brush (0.168) unstable; urgency=medium
.
[ Alexander Kjäll ]
* Bump cargo-lock to 11.
.
[ Jelmer Vernooij ]
* Use archive-provided systemd-unit-edit and desktop-edit.
* Improve man pages: update and complete options, clarify relationship
between lintian-brush and companion tools. Closes: #1110964
* Hide more debug output by default. Closes: #1128555
* debhelper-tools-from-autotools-dev-are-deprecated fixer: fix removal
of --with argument to avoid corrupting unrelated lines. Closes:
#1128193
* no-priority-field fixer: stop adding "Priority: optional" when
targeting dpkg >= 1.22.13, since it is now the default. Closes:
#1128554
* initial-upload-closes-no-bugs fixer: fix duplicate bug references by
checking case-insensitively. Closes: #1128557
* Add new debian-watch-use-templates fixer to convert v5 watch files
from explicit Source/Matching-Pattern to template syntax where
possible. Closes: #1128553
* global-files-wildcard-not-first-paragraph-in-dep5-copyright fixer:
keep debian/* patterns at end of copyright file by convention.
Closes: #1128608
* Use archive-provided systemd-unit-edit and desktop-edit.
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