Your message dated Fri, 27 Feb 2026 23:34:11 +0000
with message-id <[email protected]>
and subject line Bug#1128753: fixed in sra-sdk 3.2.1+dfsg-6
has caused the Debian Bug report #1128753,
regarding sra-sdk: FTBFS with glibc 2.43 due to ISO C23 const return types
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1128753: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1128753
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: sra-sdk
Version: 3.2.1+dfsg-5
Severity: important
Tags: ftbfs upstream
Justification: fails to build from source
User: [email protected]
Usertags: glibc-2.43
Dear maintainer(s),
sra-sdk fails to build from source with glibc 2.43, currently in
experimental. From the build log:
| In file included from /usr/include/features.h:539,
| from
/usr/include/aarch64-linux-gnu/bits/libc-header-start.h:33,
| from /usr/include/stdint.h:26,
| from /usr/lib/gcc/aarch64-linux-gnu/15/include/stdint.h:11,
| from /usr/include/ncbi-vdb/kfc/defs.h:34,
| from /usr/include/ncbi-vdb/klib/defs.h:31,
| from
/build/reproducible-path/sra-sdk-3.2.1+dfsg/libs/inc/search/grep.h:35,
| from
/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/../../libs/search/search-priv.h:30,
| from
/build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:29:
| /build/reproducible-path/sra-sdk-3.2.1+dfsg/test/search/agrep-main.c:26:15:
error: expected identifier or ‘(’ before ‘_Generic’
| 26 | #define index strchr
| | ^~~~~~
| make[3]: Leaving directory
'/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu'
...
| make[1]: *** [Makefile:169: all] Error 2
| make[1]: Leaving directory
'/build/reproducible-path/sra-sdk-3.2.1+dfsg/obj-aarch64-linux-gnu'
| dh_auto_build: error: cd obj-aarch64-linux-gnu && make -j128 INSTALL="install
--strip-program=true" VERBOSE=1 returned exit code 2
| make: *** [debian/rules:24: binary] Error 25
| dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
The full build log is available here [1].
The issue is due to ISO C23 declaration of bsearch, memchr, strchr,
strpbrk, strrchr, strstr, wcschr, wcspbrk, wcsrchr, wcsstr and wmemchr,
which now returns a pointer to a const-qualified type when the input
argument is a pointer to a const-qualified type [2].
I would like to thanks Emanuele Rocca for doing the archive rebuild on
a fast arm64 server.
Regards
Aurelien
[1]
https://people.debian.org/~ema/glibc-2.43-rebuilds/output-1/sra-sdk_arm64.build
[2]
https://sourceware.org/git/?p=glibc.git;a=blob;f=NEWS;h=e271fb2e4d76903c77a302aaec1ca22ce31027d0;hb=f762ccf84f122d1354f103a151cba8bde797d521#l19
--
Aurelien Jarno GPG: 4096R/1DDD8C9B
[email protected] http://aurel32.net
--- End Message ---
--- Begin Message ---
Source: sra-sdk
Source-Version: 3.2.1+dfsg-6
Done: Aaron M. Ucko <[email protected]>
We believe that the bug you reported is fixed in the latest version of
sra-sdk, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Aaron M. Ucko <[email protected]> (supplier of updated sra-sdk package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 27 Feb 2026 17:45:36 -0500
Source: sra-sdk
Architecture: source
Version: 3.2.1+dfsg-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Aaron M. Ucko <[email protected]>
Closes: 1126172 1128753
Changes:
sra-sdk (3.2.1+dfsg-6) unstable; urgency=medium
.
* debian/control: Build-depend on pkgconf.
* debian/patches/support_glibc_2.43.patch (new): Comment out
test/search/agrep-main.c's gratuitous redefinition of index as an alias
for strchr, which interacted poorly with C23 const-preserving generics.
(Closes: #1128753.)
* debian/patches/support_libre2-11.patch: Obtain re2's dependencies from
pkgconf rather than hardcoding absl_string_view. (Closes: #1126172,
modulo the need for a rebuilt re2.)
* Update watch file format version to 5.
* Add dversionmangle for repack versioning in debian/watch.
* Use GitHub template in watch file instead of explicit
Source/Matching-Pattern.
* Reorder Files paragraphs in debian/copyright by directory depth.
* Remove duplicate values for fields Entry, Entry, Entry, Name, Name in
debian/upstream/metadata.
* debputy lint --auto-fix (routine-update)
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