scoredalignment.h:20:17: error: 'seqan' is not a namespace-name)

Debian Bug Tracking System Tue, 05 May 2026 03:21:21 -0700

Your message dated Tue, 05 May 2026 10:20:18 +0000
with message-id <[email protected]>
and subject line Bug#1126255: fixed in unicycler 0.5.1+dfsg-4
has caused the Debian Bug report #1126255,
regarding unicycler: FTBFS: unicycler/include/scoredalignment.h:20:17: error: 
'seqan' is not a namespace-name
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)


-- 
1126255: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1126255
Debian Bug Tracking System
Contact [email protected] with problems

--- Begin Message ---

Package: src:unicycler
Version: 0.5.1+dfsg-3
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202601/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:unicycler, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find . -name __pycache__ -type d | xargs rm -rf
make distclean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Platform: Linux
Compiler: g++ 15.2.0
rm -f unicycler/src/minimap/index.o unicycler/src/minimap/kthread.o 
unicycler/src/minimap/bseq.o unicycler/src/minimap/sdust.o 
unicycler/src/minimap/map.o unicycler/src/minimap/misc.o 
unicycler/src/minimap/sketch.o unicycler/src/miniasm/dotter.o 
unicycler/src/miniasm/hit.o unicycler/src/miniasm/sys.o 
unicycler/src/miniasm/asg.o unicycler/src/miniasm/sdict.o 
unicycler/src/miniasm/asm.o unicycler/src/miniasm/paf.o 
unicycler/src/semi_global_align_exhaustive.o unicycler/src/semi_global_align.o 
unicycler/src/string_functions.o unicycler/src/kmers.o 
unicycler/src/random_alignments.o unicycler/src/overlap_align.o 
unicycler/src/consensus_align.o unicycler/src/ref_seqs.o 
unicycler/src/start_end_align.o unicycler/src/scoredalignment.o 
unicycler/src/miniasm_assembly.o unicycler/src/path_align.o 
unicycler/src/global_align.o unicycler/src/minimap_align.o
rm -f unicycler/cpp_functions.so
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary
dh binary --buildsystem=pybuild
   dh_update_autotools_config -O--buildsystem=pybuild
   dh_autoreconf -O--buildsystem=pybuild
   dh_auto_configure -O--buildsystem=pybuild
I: pybuild base:384: python3.14 setup.py config 
running config
I: pybuild base:384: python3.13 setup.py config 
running config
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Platform: Linux
Compiler: g++ 15.2.0
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/minimap/index.o 
unicycler/src/minimap/index.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/minimap/kthread.o 
unicycler/src/minimap/kthread.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/minimap/bseq.o 
unicycler/src/minimap/bseq.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/minimap/sdust.o 
unicycler/src/minimap/sdust.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/minimap/map.o 
unicycler/src/minimap/map.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/minimap/misc.o 
unicycler/src/minimap/misc.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/minimap/sketch.o 
unicycler/src/minimap/sketch.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/dotter.o 
unicycler/src/miniasm/dotter.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/hit.o 
unicycler/src/miniasm/hit.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/sys.o 
unicycler/src/miniasm/sys.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/asg.o 
unicycler/src/miniasm/asg.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/sdict.o 
unicycler/src/miniasm/sdict.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/asm.o 
unicycler/src/miniasm/asm.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o unicycler/src/miniasm/paf.o 
unicycler/src/miniasm/paf.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Iunicycler/include -fPIC -lrt 
-lpthread -O3 -DNDEBUG -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. 
-fstack-protector-strong -fstack-clash-protection -Wformat 
-Werror=format-security -fcf-protection -c -o 
unicycler/src/semi_global_align_exhaustive.o 
unicycler/src/semi_global_align_exhaustive.cpp
In file included from unicycler/include/semi_global_align_exhaustive.h:17,
                 from unicycler/src/semi_global_align_exhaustive.cpp:12:
unicycler/include/scoredalignment.h:20:17: error: âseqanâ is not a 
namespace-name
   20 | using namespace seqan;
      |                 ^~~~~
unicycler/include/scoredalignment.h:27:26: error: expected â)â before 
â<â token
   27 |     ScoredAlignment(Align<Dna5String, ArrayGaps> & alignment,
      |                    ~     ^
      |                          )
unicycler/include/scoredalignment.h:56:51: error: âScoreâ has not been 
declared
   56 |     int getCigarScore(CigarType type, int length, Score<int, Simple> & 
scoringScheme,
      |                                                   ^~~~~
unicycler/include/scoredalignment.h:56:56: error: expected â,â or â...â 
before â<â token
   56 |     int getCigarScore(CigarType type, int length, Score<int, Simple> & 
scoringScheme,
      |                                                        ^
unicycler/include/semi_global_align_exhaustive.h:20:17: error: âseqanâ is 
not a namespace-name
   20 | using namespace seqan;
      |                 ^~~~~
In file included from unicycler/include/semi_global_align.h:24,
                 from unicycler/src/semi_global_align_exhaustive.cpp:15:
unicycler/include/random_alignments.h:21:17: error: âseqanâ is not a 
namespace-name
   21 | using namespace seqan;
      |                 ^~~~~
unicycler/include/semi_global_align.h:29:17: error: âseqanâ is not a 
namespace-name
   29 | using namespace seqan;
      |                 ^~~~~
unicycler/include/semi_global_align.h:34:9: error: âSeedâ does not name a 
type
   34 | typedef Seed<Simple> TSeed;
      |         ^~~~
unicycler/include/semi_global_align.h:35:9: error: âSeedSetâ does not name 
a type
   35 | typedef SeedSet<TSeed> TSeedSet;
      |         ^~~~~~~
unicycler/include/semi_global_align.h:140:29: error: âStringâ has not been 
declared
  140 |                             String<TSeed> & seedChain, std::string & 
output, int maxLineNum,
      |                             ^~~~~~
unicycler/include/semi_global_align.h:140:35: error: expected â,â or 
â...â before â<â token
  140 |                             String<TSeed> & seedChain, std::string & 
output, int maxLineNum,
      |                                   ^
unicycler/include/semi_global_align.h:164:34: error: âStringâ was not 
declared in this scope; did you mean âseqan2::Stringâ?
  164 | long long getMaxSeedChainGapArea(String<TSeed> & seedChain, int 
readLen, int trimmedRefLen);
      |                                  ^~~~~~
      |                                  seqan2::String
In file included from /usr/include/seqan/sequence.h:105,
                 from unicycler/include/semi_global_align_exhaustive.h:16:
/usr/include/seqan/sequence/string_base.h:290:7: note: âseqan2::Stringâ 
declared here
  290 | class String;
      |       ^~~~~~
unicycler/include/semi_global_align.h:164:41: error: âTSeedâ was not 
declared in this scope
  164 | long long getMaxSeedChainGapArea(String<TSeed> & seedChain, int 
readLen, int trimmedRefLen);
      |                                         ^~~~~
unicycler/include/semi_global_align.h:164:50: error: âseedChainâ was not 
declared in this scope
  164 | long long getMaxSeedChainGapArea(String<TSeed> & seedChain, int 
readLen, int trimmedRefLen);
      |                                                  ^~~~~~~~~
unicycler/include/semi_global_align.h:164:61: error: expected 
primary-expression before âintâ
  164 | long long getMaxSeedChainGapArea(String<TSeed> & seedChain, int 
readLen, int trimmedRefLen);
      |                                                             ^~~
unicycler/include/semi_global_align.h:164:74: error: expected 
primary-expression before âintâ
  164 | long long getMaxSeedChainGapArea(String<TSeed> & seedChain, int 
readLen, int trimmedRefLen);
      |                                                                         
 ^~~
unicycler/include/semi_global_align.h:164:91: error: expression list treated as 
compound expression in initializer [-fpermissive]
  164 | long long getMaxSeedChainGapArea(String<TSeed> & seedChain, int 
readLen, int trimmedRefLen);
      |                                                                         
                  ^
unicycler/src/semi_global_align_exhaustive.cpp: In function âScoredAlignment* 
semiGlobalAlignmentExhaustive(std::string, std::string, int, int, int, int)â:
unicycler/src/semi_global_align_exhaustive.cpp:45:5: error: âDna5Stringâ 
was not declared in this scope; did you mean âseqan2::Dna5Stringâ?
   45 |     Dna5String sequenceH(s1);
      |     ^~~~~~~~~~
      |     seqan2::Dna5String
In file included from /usr/include/seqan/sequence.h:112:
/usr/include/seqan/sequence/sequence_shortcuts.h:119:36: note: 
âseqan2::Dna5Stringâ declared here
  119 | typedef String<Dna5, Alloc<void> > Dna5String;
      |                                    ^~~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:46:15: error: expected â;â 
before âsequenceVâ
   46 |     Dna5String sequenceV(s2);
      |               ^~~~~~~~~~
      |               ;
unicycler/src/semi_global_align_exhaustive.cpp:48:5: error: âAlignâ was not 
declared in this scope; did you mean âseqan2::Alignâ?
   48 |     Align<Dna5String, ArrayGaps> alignment;
      |     ^~~~~
      |     seqan2::Align
In file included from /usr/include/seqan/file.h:65,
                 from /usr/include/seqan/stream.h:62,
                 from /usr/include/seqan/score.h:43,
                 from /usr/include/seqan/graph_align.h:45,
                 from /usr/include/seqan/align.h:59,
                 from unicycler/include/scoredalignment.h:18:
/usr/include/seqan/file/file_forwards.h:46:7: note: âseqan2::Alignâ 
declared here
   46 | class Align;
      |       ^~~~~
unicycler/src/semi_global_align_exhaustive.cpp:48:23: error: âArrayGapsâ 
was not declared in this scope; did you mean âseqan2::ArrayGapsâ?
   48 |     Align<Dna5String, ArrayGaps> alignment;
      |                       ^~~~~~~~~
      |                       seqan2::ArrayGaps
In file included from /usr/include/seqan/index.h:137,
                 from /usr/include/seqan/seeds.h:51,
                 from unicycler/include/semi_global_align.h:16:
/usr/include/seqan/index/index_esa_base.h:263:29: note: âseqan2::ArrayGapsâ 
declared here
  263 |     typedef Tag<ArrayGaps_> ArrayGaps;
      |                             ^~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:48:34: error: âalignmentâ 
was not declared in this scope; did you mean âseqan2::alignmentâ?
   48 |     Align<Dna5String, ArrayGaps> alignment;
      |                                  ^~~~~~~~~
      |                                  seqan2::alignment
In file included from /usr/include/seqan/index.h:138:
/usr/include/seqan/index/index_esa_stree.h:1193:5: note: 
âseqan2::alignmentâ declared here
 1193 |     alignment(Iter< Index< StringSet<TString, 
Owner<ConcatDirect<TConcSpec> > >, TIndexSpec >, VSTree<TSpec> > &it)
      |     ^~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:49:12: error: ârowsâ was not 
declared in this scope; did you mean âseqan2::rowsâ?
   49 |     resize(rows(alignment), 2);
      |            ^~~~
      |            seqan2::rows
In file included from /usr/include/seqan/align.h:97:
/usr/include/seqan/align/align_base.h:341:1: note: âseqan2::rowsâ declared 
here
  341 | rows(Align<TSource, TSpec> const & me)
      | ^~~~
unicycler/src/semi_global_align_exhaustive.cpp:49:5: error: âresizeâ was 
not declared in this scope; did you mean âseqan2::resizeâ?
   49 |     resize(rows(alignment), 2);
      |     ^~~~~~
      |     seqan2::resize
In file included from /usr/include/seqan/index.h:169:
/usr/include/seqan/index/index_fm_compressed_sa.h:456:1: note: 
âseqan2::resizeâ declared here
  456 | resize(CompressedSA<TText, TSpec, TConfig> & compressedSA, TSize size, 
Tag<TExpand> tag)
      | ^~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:50:18: error: ârowâ was not 
declared in this scope; did you mean âseqan2::rowâ?
   50 |     assignSource(row(alignment, 0), sequenceH);
      |                  ^~~
      |                  seqan2::row
/usr/include/seqan/align/align_base.h:372:1: note: âseqan2::rowâ declared 
here
  372 | row(Align<TSource, TSpec> const & me,
      | ^~~
unicycler/src/semi_global_align_exhaustive.cpp:50:37: error: âsequenceHâ 
was not declared in this scope
   50 |     assignSource(row(alignment, 0), sequenceH);
      |                                     ^~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:50:5: error: âassignSourceâ 
was not declared in this scope; did you mean âseqan2::assignSourceâ?
   50 |     assignSource(row(alignment, 0), sequenceH);
      |     ^~~~~~~~~~~~
      |     seqan2::assignSource
In file included from /usr/include/seqan/align.h:89:
/usr/include/seqan/align/gaps_anchor.h:672:1: note: âseqan2::assignSourceâ 
declared here
  672 | assignSource(Gaps<TSequence, AnchorGaps<TGapAnchor> > & gaps, 
TSequence2 const & source)
      | ^~~~~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:51:37: error: âsequenceVâ 
was not declared in this scope
   51 |     assignSource(row(alignment, 1), sequenceV);
      |                                     ^~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:52:5: error: âScoreâ was not 
declared in this scope; did you mean âseqan2::Scoreâ?
   52 |     Score<int, Simple> scoringScheme(matchScore, mismatchScore, 
gapExtensionScore, gapOpenScore);
      |     ^~~~~
      |     seqan2::Score
In file included from /usr/include/seqan/score.h:45:
/usr/include/seqan/score/score_base.h:68:7: note: âseqan2::Scoreâ declared 
here
   68 | class Score;
      |       ^~~~~
unicycler/src/semi_global_align_exhaustive.cpp:52:11: error: expected 
primary-expression before âintâ
   52 |     Score<int, Simple> scoringScheme(matchScore, mismatchScore, 
gapExtensionScore, gapOpenScore);
      |           ^~~
unicycler/src/semi_global_align_exhaustive.cpp:54:5: error: âAlignConfigâ 
was not declared in this scope; did you mean âseqan2::AlignConfigâ?
   54 |     AlignConfig<true, true, true, true> alignConfig;
      |     ^~~~~~~~~~~
      |     seqan2::AlignConfig
In file included from /usr/include/seqan/align.h:70:
/usr/include/seqan/align/align_config.h:93:7: note: âseqan2::AlignConfigâ 
declared here
   93 | class AlignConfig
      |       ^~~~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:54:41: error: âalignConfigâ 
was not declared in this scope
   54 |     AlignConfig<true, true, true, true> alignConfig;
      |                                         ^~~~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:56:36: error: 
âscoringSchemeâ was not declared in this scope; did you mean 
âseqan2::scoringSchemeâ?
   56 |         globalAlignment(alignment, scoringScheme, alignConfig);
      |                                    ^~~~~~~~~~~~~
      |                                    seqan2::scoringScheme
In file included from /usr/include/seqan/find.h:93,
                 from /usr/include/seqan/index.h:46:
/usr/include/seqan/find/find_score.h:180:1: note: âseqan2::scoringSchemeâ 
declared here
  180 | scoringScheme(Pattern<TNeedle, DPSearch<TScore, TSpec, 
TFindBeginPatternSpec> > & me)
      | ^~~~~~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:56:9: error: 
âglobalAlignmentâ was not declared in this scope; did you mean 
âseqan2::globalAlignmentâ?
   56 |         globalAlignment(alignment, scoringScheme, alignConfig);
      |         ^~~~~~~~~~~~~~~
      |         seqan2::globalAlignment
In file included from /usr/include/seqan/align.h:218:
/usr/include/seqan/align/global_alignment_specialized.h:121:5: note: 
âseqan2::globalAlignmentâ declared here
  121 | int globalAlignment(Gaps<TSequenceH, TGapsSpecH> & gapsH,
      |     ^~~~~~~~~~~~~~~
unicycler/src/semi_global_align_exhaustive.cpp:66:67: error: 
âscoringSchemeâ was not declared in this scope; did you mean 
âseqan2::scoringSchemeâ?
   66 |                                0, startTime, 0, true, true, true, 
scoringScheme);
      |                                                                   
^~~~~~~~~~~~~
      |                                                                   
seqan2::scoringScheme
/usr/include/seqan/find/find_score.h:180:1: note: âseqan2::scoringSchemeâ 
declared here
  180 | scoringScheme(Pattern<TNeedle, DPSearch<TScore, TSpec, 
TFindBeginPatternSpec> > & me)
      | ^~~~~~~~~~~~~
make[2]: *** [Makefile:120: unicycler/src/semi_global_align_exhaustive.o] Error 
1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: *** [debian/rules:30: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:23: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit 
status 2
--------------------------------------------------------------------------------

--- End Message ---

--- Begin Message ---

Source: unicycler
Source-Version: 0.5.1+dfsg-4
Done: Andreas Tille <[email protected]>

We believe that the bug you reported is fixed in the latest version of
unicycler, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated unicycler package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Tue, 05 May 2026 11:09:34 +0200
Source: unicycler
Architecture: source
Version: 0.5.1+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Closes: 1126255
Changes:
 unicycler (0.5.1+dfsg-4) unstable; urgency=medium
 .
   * Take over patch from 0.5.1+dfsg-2 ro build with SeqAn 2.5.0
     Closes: #1126255
   * debian/tests/control: Drop restriction skip-not-installable and use
     Architecture: amd64 instead
   * d/watch: version=5
   * cme fix dpkg-control
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unicycler_0.5.1+dfsg-4_amd64.buildinfo

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--- End Message ---

Bug#1126255: marked as done (unicycler: FTBFS: unicycler/include/scoredalignment.h:20:17: error: 'seqan' is not a namespace-name)

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