Your message dated Sat, 09 May 2026 17:34:57 +0000
with message-id <[email protected]>
and subject line Bug#1118594: fixed in rdkit 202603.2-1
has caused the Debian Bug report #1118594,
regarding Dependency on python3-pil is missing
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1118594: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1118594
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: python3-rdkit
Version: 202503.1-4
Severity: normal
Dear Maintainer,
On an Ubuntu system where python3-pil is not installed, I noticed that depicting
molecules in RStudio no longer works when using python3-rdkit. The error
message pointed at a missing PIL module.
On this Debian trixie system, I confirmed that molecules are correctly
depicted in a Jupyter notebook if python3-pil is installed, but if
it is not, I get an output like
<rdkit.Chem.rdchem.Mol object at 0x7faaaaaa000>
instead of a molecule depiction.
Therefore, I think python3-rdkit should have a dependency on python3-pil
in order to provide its molecule depiction functionality.
Cheers,
Johannes
-- System Information:
Debian Release: 13.1
APT prefers stable-updates
APT policy: (500, 'stable-updates'), (500, 'stable-security'), (500,
'stable'), (15, 'unstable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.12.48+deb13-amd64 (SMP w/16 CPU threads; PREEMPT)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages python3-rdkit depends on:
ii fonts-freefont-ttf 20211204+svn4273-2
ii libboost-numpy1.83.0 [libboost-numpy1.83.0-py313] 1.83.0-4.2
ii libboost-python1.83.0 [libboost-python1.83.0-py313] 1.83.0-4.2
ii libboost-serialization1.83.0 1.83.0-4.2
ii libc6 2.41-12
ii libcairo2 1.18.4-1+b1
ii libcoordgen3 3.0.2-1+b2
ii libgcc-s1 14.2.0-19
ii librdkit1t64 202503.1-4
ii libstdc++6 14.2.0-19
ii python3 3.13.5-1
ii python3-numpy [python3-numpy2-abi0] 1:2.2.4+ds-1
ii rdkit-data 202503.1-4
python3-rdkit recommends no packages.
Versions of packages python3-rdkit suggests:
pn rdkit-doc <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: rdkit
Source-Version: 202603.2-1
Done: Michael Banck <[email protected]>
We believe that the bug you reported is fixed in the latest version of
rdkit, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <[email protected]> (supplier of updated rdkit package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 09 May 2026 18:41:57 +0200
Source: rdkit
Architecture: source
Version: 202603.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Michael Banck <[email protected]>
Closes: 1118594
Changes:
rdkit (202603.2-1) unstable; urgency=medium
.
* New upstream version 202603.2.
* debian/patches/NoDownloads.patch: Removed GraphMol/MolInterchange hunk,
functionality removed upstream.
* debian/patches/sphinx_compile_fixes.patch: Refreshed.
* debian/patches/fix_inchi_linking.patch: Likewise.
* debian/patches/better_enums.patch: Likewise.
* debian/control, debian/control.in (python3-rdkit/Depends): Added
python3-pil (Closes: #1118594).
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