Your message dated Wed, 13 May 2026 14:39:05 +0000
with message-id <[email protected]>
and subject line Bug#1135451: fixed in python-biopython 1.87+dfsg-1
has caused the Debian Bug report #1135451,
regarding python-biopython: FTBFS: build finished with problems, 6 warnings
(with warnings treated as errors).
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1135451: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1135451
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:python-biopython
Version: 1.86+dfsg-1
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202605/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-biopython, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
pybuild --clean -i python{version} -p "3.14 3.13" --parallel=2
I: pybuild base:385: python3.14 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:759:
SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX
license expression:
License :: Freely Distributable
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generating indices... genindex py-modindex done
writing additional pages... search done
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dumping search index in English (code: en)... done
dumping object inventory... done
build finished with problems, 6 warnings (with warnings treated as errors).
make[2]: *** [Makefile:20: html] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Doc'
make[1]: *** [debian/rules:75: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:52: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: python-biopython
Source-Version: 1.87+dfsg-1
Done: Karsten Schöke <[email protected]>
We believe that the bug you reported is fixed in the latest version of
python-biopython, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Karsten Schöke <[email protected]> (supplier of updated
python-biopython package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 13 May 2026 15:39:59 +0200
Source: python-biopython
Built-For-Profiles: nocheck
Architecture: source
Version: 1.87+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Karsten Schöke <[email protected]>
Closes: 1123673 1131072 1135451
Changes:
python-biopython (1.87+dfsg-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
Fix CVE-2025-68463 (Closes: #1123673, #1131072)
* Standards-Version: 4.7.4 (routine-update)
* d/rules: Sphinx no longer aborts the build on warnings. (Closes: #1135451)
* d/t/control: Remove obsolete skip-not-installable option
* d/rules: Updated the link to the Debian mathjax jslib after upstream
change.
* d/control: wrap-and-sort and change B-D
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