atomic:215:21: error: static assertion failed: std::atomic requires a trivially copyable type)

Debian Bug Tracking System Wed, 05 Aug 2026 14:07:28 -0700

Your message dated Wed, 05 Aug 2026 21:06:26 +0000
with message-id <[email protected]>
and subject line Bug#1143671: fixed in libmaus2 2.0.813+ds-6
has caused the Debian Bug report #1143671,
regarding libmaus2: FTBFS: /usr/include/c++/16/atomic:215:21: error: static 
assertion failed: std::atomic requires a trivially copyable type
to be marked as done.


This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1143671: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1143671
Debian Bug Tracking System
Contact [email protected] with problems

--- Begin Message ---

Package: src:libmaus2
Version: 2.0.813+ds-5
Severity: serious
Tags: ftbfs forky sid

Dear maintainer:

During a rebuild of all packages in unstable, this package failed to build.

Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:

https://people.debian.org/~sanvila/build-logs/202608/

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:libmaus2, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary
dh binary
   dh_update_autotools_config
   dh_autoreconf
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: no obvious need to run autopoint
autoreconf: running: aclocal --force -I m4
autoreconf: configure.ac: tracing
autoreconf: running: libtoolize --copy --force
libtoolize: putting auxiliary files in '.'.
libtoolize: copying file './ltmain.sh'

[... snipped ...]

/bin/bash ../libtool  --tag=CXX   --mode=compile x86_64-linux-gnu-g++ 
-DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time 
-D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2  -std=c++17 -pthread 
-fopenmp   -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection  
-std=c++17 -pthread -fopenmp -c -o 
libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.lo `test -f 
'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp' || echo 
'./'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c 
libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp  -fPIC -DPIC -o 
libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o
In file included from 
./libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp:32,
                 from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.hpp:26,
                 from libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp:21:
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2057 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2089 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2136 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2169 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
/bin/bash ../libtool  --tag=CXX   --mode=compile x86_64-linux-gnu-g++ 
-DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time 
-D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2  -std=c++17 -pthread 
-fopenmp   -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection  
-std=c++17 -pthread -fopenmp -c -o 
libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.lo `test -f 
'libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp' || echo 
'./'`libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c 
libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp  -fPIC -DPIC -o 
libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c 
libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.cpp -o 
libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_8.o >/dev/null 
2>&1
In file included from 
./libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp:32,
                 from ./libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.hpp:26,
                 from libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp:21:
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2057 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2089 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2136 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2169 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c 
libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.cpp -o 
libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentY256_16.o >/dev/null 
2>&1
/bin/bash ../libtool  --tag=CXX   --mode=compile x86_64-linux-gnu-g++ 
-DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time 
-D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2  -std=c++17 -pthread 
-fopenmp   -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection  
-std=c++17 -pthread -fopenmp -c -o 
libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.lo 
`test -f 'libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp' || echo 
'./'`libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c 
libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp  -fPIC -DPIC -o 
libmaus2/lcs/.libs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o
In file included from 
./libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreTemplate.hpp:32,
                 from 
./libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.hpp:26,
                 from 
libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp:21:
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2057 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2089 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2136 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2169 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
/bin/bash ../libtool  --tag=CXX   --mode=compile x86_64-linux-gnu-g++ 
-DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time 
-D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2  -std=c++17 -pthread 
-fopenmp   -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection  
-std=c++17 -pthread -fopenmp -c -o 
libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.lo `test -f 
'libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp' || echo 
'./'`libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp  
-fPIC -DPIC -o 
libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c 
libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.cpp -o 
libmaus2/lcs/simd_align_256_la-SimdX86BandedGlobalAlignmentScoreY256_16.o 
>/dev/null 2>&1
In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp:32,
                 from ./libmaus2/lcs/SimdX86GlobalAlignmentY256_8.hpp:26,
                 from libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp:21:
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2057 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2089 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2136 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2169 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_8.cpp 
-o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_8.o >/dev/null 2>&1
/bin/bash ../libtool  --tag=CXX   --mode=compile x86_64-linux-gnu-g++ 
-DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time 
-D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2  -std=c++17 -pthread 
-fopenmp   -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection  
-std=c++17 -pthread -fopenmp -c -o 
libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.lo `test -f 
'libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp' || echo 
'./'`libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp  
-fPIC -DPIC -o 
libmaus2/lcs/.libs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o
In file included from ./libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp:32,
                 from ./libmaus2/lcs/SimdX86GlobalAlignmentY256_16.hpp:26,
                 from libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp:21:
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2057 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2089 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2136 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2169 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
/bin/bash ../libtool  --tag=CXX   --mode=compile x86_64-linux-gnu-g++ 
-DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time 
-D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 -mavx2  -std=c++17 -pthread 
-fopenmp   -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection  
-std=c++17 -pthread -fopenmp -c -o 
libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.lo `test -f 
'libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp' || echo 
'./'`libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp  
-fPIC -DPIC -o 
libmaus2/lcs/.libs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c libmaus2/lcs/SimdX86GlobalAlignmentY256_16.cpp 
-o libmaus2/lcs/simd_align_256_la-SimdX86GlobalAlignmentY256_16.o >/dev/null 
2>&1
In file included from ./libmaus2/lcs/Aligner.hpp:21,
                 from ./libmaus2/lcs/NP.hpp:21,
                 from libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp:20:
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2057:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2057 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxA(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2089:52: warning: variable 
âbposâ set but not used [-Wunused-but-set-variable=]
 2089 |                                 uint64_t apos = 0, bpos = 0;
      |                                                    ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2136:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2136 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
./libmaus2/lcs/AlignmentTraceContainer.hpp: In static member function âstatic 
std::pair<long unsigned int, long unsigned int> 
libmaus2::lcs::AlignmentTraceContainer::advanceMaxB(const 
libmaus2::lcs::BaseConstants::step_type*, const 
libmaus2::lcs::BaseConstants::step_type*, uint64_t)â:
./libmaus2/lcs/AlignmentTraceContainer.hpp:2169:42: warning: variable 
âaposâ set but not used [-Wunused-but-set-variable=]
 2169 |                                 uint64_t apos = 0, bpos = 0;
      |                                          ^~~~
x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I..   -Wdate-time -D_FORTIFY_SOURCE=2 
-Wdate-time -D_FORTIFY_SOURCE=2   -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection  
-std=c++17 -pthread -fopenmp -c -o test/testThreadPoolRead-testThreadPoolRead.o 
`test -f 'test/testThreadPoolRead.cpp' || echo './'`test/testThreadPoolRead.cpp
libtool: compile:  x86_64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time 
-D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -msse2 -mssse3 -msse4.1 
-mavx2 -std=c++17 -pthread -fopenmp -W -Wall -Wnon-virtual-dtor -g -O2 
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong 
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection 
-std=c++17 -pthread -fopenmp -c libmaus2/lcs/AlignmentOneAgainstManyAVX2.cpp -o 
libmaus2/lcs/simd_align_256_la-AlignmentOneAgainstManyAVX2.o >/dev/null 2>&1
In file included from ./libmaus2/parallel/threadpool/ThreadPool.hpp:22,
                 from 
./libmaus2/parallel/threadpool/input/InputThreadControl.hpp:21,
                 from 
./libmaus2/parallel/threadpool/input/InputThreadTrivialReturnInterface.hpp:21,
                 from test/testThreadPoolRead.cpp:18:
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<libmaus2::parallel::threadpool::ThreadWorkPackageData>
 >â:
./libmaus2/parallel/threadpool/ThreadWorkPackage.hpp:40:62:   required from here
   40 |                                 
libmaus2::util::atomic_shared_ptr<ThreadWorkPackageData> data;
      |                                                                         
                 ^~~~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<libmaus2::parallel::threadpool::ThreadPoolDispatchable>
 >â:
./libmaus2/parallel/threadpool/ThreadPoolDispatcher.hpp:39:84:   required from 
here
   39 |                                 
libmaus2::util::atomic_shared_ptr<ThreadPoolDispatchable> P;
      |                                                                         
                  ^
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<char []> >â:
./libmaus2/avl/AtomicAVLPtrValueMap.hpp:410:48:   required from here
  410 |                         libmaus2::util::atomic_shared_ptr< char[] > AC;
      |                                                                     ^~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<std::atomic<long unsigned int> []> >â:
./libmaus2/avl/AtomicAVLPtrValueMap.hpp:418:67:   required from âstruct 
libmaus2::avl::AtomicAVLPtrValueMap<std::type_index, 
libmaus2::parallel::AtomicPtrStack<libmaus2::parallel::threadpool::ThreadWorkPackageData>
 >â
  418 |                         libmaus2::util::atomic_shared_ptr< 
std::atomic<index_type>[] > F;
      |                                                                         
               ^
./libmaus2/parallel/threadpool/ThreadPool.hpp:52:118:   required from here
   52 |                                 
libmaus2::avl::AtomicAVLPtrValueMap<std::type_index, 
libmaus2::parallel::AtomicPtrStack<ThreadWorkPackageData> > dataMap;
      |                                                                         
                                                                         ^~~~~~~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<std::atomic<std::shared_ptr<libmaus2::parallel::threadpool::ThreadWorkPackage>
 > []> >â:
./libmaus2/parallel/AtomicPtrStack.hpp:35:6:   required from âstruct 
libmaus2::parallel::AtomicPtrStack<libmaus2::parallel::threadpool::ThreadWorkPackage>â
   35 |                         > p;
      |                           ^
./libmaus2/parallel/threadpool/ThreadPool.hpp:53:59:   required from here
   53 |                                 
libmaus2::parallel::AtomicPtrStack<ThreadWorkPackage> packageStack;
      |                                                                         
              ^~~~~~~~~~~~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<std::atomic<std::shared_ptr<libmaus2::exception::LibMausException>
 > []> >â:
./libmaus2/parallel/AtomicPtrStack.hpp:35:6:   required from âstruct 
libmaus2::parallel::AtomicPtrStack<libmaus2::exception::LibMausException>â
   35 |                         > p;
      |                           ^
./libmaus2/parallel/threadpool/ThreadPool.hpp:65:79:   required from here
   65 |                                 
libmaus2::parallel::AtomicPtrStack<libmaus2::exception::LibMausException> 
panicStack;
      |                                                                         
                                  ^~~~~~~~~~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<std::atomic<std::shared_ptr<std::thread> > []> >â:
./libmaus2/parallel/AtomicPtrStack.hpp:35:6:   required from âstruct 
libmaus2::parallel::AtomicPtrStack<std::thread>â
   35 |                         > p;
      |                           ^
./libmaus2/parallel/threadpool/ThreadPool.hpp:66:55:   required from here
   66 |                                 libmaus2::parallel::AtomicPtrStack< 
std::thread > Vthread;
      |                                                                         
          ^~~~~~~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<libmaus2::parallel::threadpool::ThreadPoolDispatcher>
 >â:
/usr/include/c++/16/bits/stl_pair.h:312:11:   required from âstruct 
std::pair<const std::atomic<std::type_index>, const 
std::atomic<std::shared_ptr<libmaus2::parallel::threadpool::ThreadPoolDispatcher>
 > >â
  312 |       _T2 second;                ///< The second member
      |           ^~~~~~
./libmaus2/parallel/threadpool/ThreadPool.hpp:159:15:   required from here
  159 |                                         return it->second.load().get();
      |                                                  ^~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<libmaus2::parallel::threadpool::ThreadWorkPackage> 
>â:
./libmaus2/parallel/threadpool/ThreadPool.hpp:283:14:   required from here
  283 |                                         ptr = it->load();
      |                                                 ^~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<std::atomic<std::shared_ptr<libmaus2::parallel::threadpool::ThreadWorkPackageData>
 > []> >â:
./libmaus2/parallel/AtomicPtrStack.hpp:35:6:   required from âstruct 
libmaus2::parallel::AtomicPtrStack<libmaus2::parallel::threadpool::ThreadWorkPackageData>â
   35 |                         > p;
      |                           ^
./libmaus2/parallel/threadpool/ThreadPool.hpp:318:85:   required from here
  318 |                                                 
libmaus2::util::shared_ptr < AtomicPtrStack<ThreadWorkPackageData> > nobj(new 
AtomicPtrStack<ThreadWorkPackageData>);
      |                                                                         
                                                      
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<libmaus2::parallel::AtomicPtrStack<libmaus2::parallel::threadpool::ThreadWorkPackageData>
 > >â:
/usr/include/c++/16/bits/stl_pair.h:312:11:   required from âstruct 
std::pair<const std::atomic<std::type_index>, const 
std::atomic<std::shared_ptr<libmaus2::parallel::AtomicPtrStack<libmaus2::parallel::threadpool::ThreadWorkPackageData>
 > > >â
  312 |       _T2 second;                ///< The second member
      |           ^~~~~~
./libmaus2/parallel/threadpool/ThreadPool.hpp:325:15:   required from here
  325 |                                         return it->second.load();
      |                                                  ^~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<std::atomic<std::shared_ptr<libmaus2::parallel::threadpool::input::ThreadPoolInputBlock>
 > []> >â:
./libmaus2/parallel/AtomicPtrStack.hpp:35:6:   required from âstruct 
libmaus2::parallel::AtomicPtrStack<libmaus2::parallel::threadpool::input::ThreadPoolInputBlock>â
   35 |                         > p;
      |                           ^
./libmaus2/parallel/threadpool/input/ThreadPoolInputInfo.hpp:51:63:   required 
from here
   51 |                                         
libmaus2::parallel::AtomicPtrStack<ThreadPoolInputBlock> freeBlocks;
      |                                                                         
                         ^~~~~~~~~~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
/usr/include/c++/16/atomic: In instantiation of âstruct 
std::atomic<std::shared_ptr<libmaus2::parallel::threadpool::input::ThreadPoolInputBlock>
 >â:
./libmaus2/parallel/AtomicPtrQueue.hpp:89:23:   required from âbool 
libmaus2::parallel::AtomicPtrQueue<type>::pop(libmaus2::util::shared_ptr<value_type>&)
 [with type = libmaus2::parallel::threadpool::input::ThreadPoolInputBlock; 
libmaus2::util::shared_ptr<value_type> = 
std::shared_ptr<libmaus2::parallel::threadpool::input::ThreadPoolInputBlock>]â
   89 |                                 T = p.load().get()[l++ % ln].load();
      |                                     ~~~~~~~~~~~~~~^
./libmaus2/parallel/threadpool/input/ThreadPoolInputInfo.hpp:112:27:   required 
from here
  112 |                                                 while ( 
outQueue.pop(block) )
      |                                                         
~~~~~~~~~~~~^~~~~~~
/usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic 
requires a trivially copyable type
  215 |       static_assert(__is_trivially_copyable(_Tp),
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
  â¢ âfalseâ evaluates to false
make[3]: *** [Makefile:10377: test/testThreadPoolRead-testThreadPoolRead.o] 
Error 1
make[3]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[2]: *** [Makefile:687: all-recursive] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: *** [Makefile:571: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j2 returned exit code 2
make: *** [debian/rules:16: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit 
status 2
--------------------------------------------------------------------------------

--- End Message ---

--- Begin Message ---

Source: libmaus2
Source-Version: 2.0.813+ds-6
Done: Étienne Mollier <[email protected]>

We believe that the bug you reported is fixed in the latest version of
libmaus2, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated libmaus2 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Wed, 05 Aug 2026 21:59:48 +0200
Source: libmaus2
Architecture: source
Version: 2.0.813+ds-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1143671
Changes:
 libmaus2 (2.0.813+ds-6) unstable; urgency=medium
 .
   [ Andreas Tille ]
   * Replace pkg-config with pkgconf in Build-Depends
 .
   [ Étienne Mollier ]
   * d/watch: switch to Template: Gitlab.
     This repairs the scanning, which was broken by the initial attempt to
     make use of the Mode: Gitlab.
   * unlock-stdc++.patch: new: stop passing -std=c++17.
     This change fixes a build failure with gcc-16. (Closes: #1143671)
   * d/rules: do not ship libmaus2_simd_align_128.a.
     This library does not have a code section, likely due to shipping
     alternate implementations of a single function for variour levels of
     SIMD support.
   * d/control: drop redundant Priority: optional.
   * d/control: declare compliance to standards version 4.7.4.
   * d/control: bump to debhelper-compat 14.
   * d/*lintian-overrides: override shared-library-lacks-prerequisites.
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 bdbdb6aff13e41a83105800ad3d3d126a98015a0 10260 
libmaus2_2.0.813+ds-6.debian.tar.xz
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Files:
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libmaus2_2.0.813+ds-6.dsc
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--- End Message ---

Bug#1143671: marked as done (libmaus2: FTBFS: /usr/include/c++/16/atomic:215:21: error: static assertion failed: std::atomic requires a trivially copyable type)

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