Your message dated Thu, 06 Aug 2026 08:23:04 +0000
with message-id <[email protected]>
and subject line Bug#1143661: fixed in indelible 1.03-8
has caused the Debian Bug report #1143661,
regarding indelible: FTBFS: src/paml.cpp:473:20: error: reference to 'identity'
is ambiguous
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
1143661: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1143661
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: src:indelible
Version: 1.03-7
Severity: serious
Tags: ftbfs forky sid
Dear maintainer:
During a rebuild of all packages in unstable, this package failed to build.
Below you will find the last part of the build log (probably the most
relevant part, but not necessarily). If required, the full build log
is available here:
https://people.debian.org/~sanvila/build-logs/202608/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you cannot reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:indelible, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
autoreconf: export WARNINGS=
autoreconf: Entering directory '.'
autoreconf: configure.ac: no obvious need to run autopoint
autoreconf: running: aclocal --force
autoreconf: configure.ac: tracing
autoreconf: configure.ac: not using Libtool
autoreconf: configure.ac: not using Intltool
autoreconf: configure.ac: not using Gtkdoc
autoreconf: configure.ac: no need to run autopoint (confirmed)
autoreconf: running: /usr/bin/autoconf --force
autoreconf: configure.ac: not running autoheader: no config headers
autoreconf: running: automake --add-missing --copy --force-missing
configure.ac:4: installing './compile'
configure.ac:16: installing './config.guess'
configure.ac:16: installing './config.sub'
configure.ac:2: installing './install-sh'
configure.ac:2: installing './missing'
Makefile.am:2: warning: source file 'src/indelible.cpp' is in a subdirectory,
Makefile.am:2: but option 'subdir-objects' is disabled
automake: warning: possible forward-incompatibility.
automake: At least one source file is in a subdirectory, but the
'subdir-objects'
automake: automake option hasn't been enabled. For now, the corresponding
output
automake: object file(s) will be placed in the top-level directory. However,
this
automake: behavior may change in a future Automake major version, with object
automake: files being placed in the same subdirectory as the corresponding
sources.
automake: You are advised to start using 'subdir-objects' option throughout your
automake: project, to avoid future incompatibility.
Makefile.am:8: warning: source file 'src/control.cpp' is in a subdirectory,
Makefile.am:8: but option 'subdir-objects' is disabled
Makefile.am:8: warning: source file 'src/models.cpp' is in a subdirectory,
Makefile.am:8: but option 'subdir-objects' is disabled
Makefile.am:8: warning: source file 'src/paml.cpp' is in a subdirectory,
Makefile.am:8: but option 'subdir-objects' is disabled
Makefile.am:8: warning: source file 'src/randoms.cpp' is in a subdirectory,
Makefile.am:8: but option 'subdir-objects' is disabled
Makefile.am: installing './depcomp'
autoreconf: configure.ac: not running make: --make not given
autoreconf: Leaving directory '.'
dh_auto_configure
./configure --build=x86_64-linux-gnu --prefix=/usr
--includedir=\${prefix}/include --mandir=\${prefix}/share/man
--infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var
--disable-option-checking --disable-silent-rules
--libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run
--disable-maintainer-mode --disable-dependency-tracking
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking whether UID '995' is supported by ustar format... yes
checking whether GID '995' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports the include directive... yes (GNU style)
checking for gcc... x86_64-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether x86_64-linux-gnu-gcc accepts -g... yes
checking for x86_64-linux-gnu-gcc option to enable C23 features... none needed
checking whether x86_64-linux-gnu-gcc understands -c and -o together... yes
checking dependency style of x86_64-linux-gnu-gcc... none
checking how to run the C preprocessor... x86_64-linux-gnu-gcc -E
checking whether the compiler supports GNU C++... yes
checking whether x86_64-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-linux-gnu-g++... none
checking for cos in -lm... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for size_t... yes
checking for int32_t... yes
checking for uint32_t... yes
checking for _Bool... no
checking for stdbool.h that conforms to C99 or later... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking whether malloc (0) returns nonnull... yes
checking for limits.h... yes
checking for floor... yes
checking for pow... yes
checking for sqrt... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
dh_auto_build
make -j2
make[1]: Entering directory '/<<PKGBUILDDIR>>'
x86_64-linux-gnu-g++ -DPACKAGE_NAME=\"indelible\"
-DPACKAGE_TARNAME=\"indelible\" -DPACKAGE_VERSION=\"1.03\"
-DPACKAGE_STRING=\"indelible\ 1.03\" -DPACKAGE_BUGREPORT=\"\"
-DPACKAGE_URL=\"\" -DPACKAGE=\"indelible\" -DVERSION=\"1.03\" -DHAVE_LIBM=1
-DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1
-DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_STDBOOL_H=1 -DHAVE_MALLOC=1
-DHAVE_LIMITS_H=1 -DHAVE_FLOOR=1 -DHAVE_POW=1 -DHAVE_SQRT=1 -I. -Isrc
-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection -c -o indelible-indelible.o `test -f
'src/indelible.cpp' || echo './'`src/indelible.cpp
In file included from src/randoms.cpp:31,
from src/paml.cpp:41,
from src/models.cpp:35,
from src/control.cpp:38,
from src/indelible.cpp:135:
src/MersenneTwister.h: In member function âMTRand::uint32
MTRand::randInt()â:
src/MersenneTwister.h:187:25: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
187 | register uint32 s1;
| ^~
src/MersenneTwister.h: In member function âvoid MTRand::seed(uint32*,
uint32)â:
src/MersenneTwister.h:232:22: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
232 | register int i = 1;
| ^
src/MersenneTwister.h:233:25: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
233 | register uint32 j = 0;
| ^
src/MersenneTwister.h:234:22: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
234 | register int k = ( N > seedLength ? N : seedLength );
| ^
src/MersenneTwister.h: In member function âvoid MTRand::initialize(uint32)â:
src/MersenneTwister.h:273:26: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
273 | register uint32 *s = state;
| ^
src/MersenneTwister.h:274:26: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
274 | register uint32 *r = state;
| ^
src/MersenneTwister.h:275:22: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
275 | register int i = 1;
| ^
src/MersenneTwister.h: In member function âvoid MTRand::reload()â:
src/MersenneTwister.h:289:26: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
289 | register uint32 *p = state;
| ^
src/MersenneTwister.h:290:22: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
290 | register int i;
| ^
src/MersenneTwister.h:291:20: warning: arithmetic between different enumeration
types âMTRand::<unnamed enum>â and âMTRand::<unnamed enum>â is
deprecated [-Wdeprecated-enum-enum-conversion]
291 | for( i = N - M; i--; ++p )
| ~~^~~
src/MersenneTwister.h:294:32: warning: arithmetic between different enumeration
types âMTRand::<unnamed enum>â and âMTRand::<unnamed enum>â is
deprecated [-Wdeprecated-enum-enum-conversion]
294 | *p = twist( p[M-N], p[0], p[1] );
| ~^~
src/MersenneTwister.h:295:24: warning: arithmetic between different enumeration
types âMTRand::<unnamed enum>â and âMTRand::<unnamed enum>â is
deprecated [-Wdeprecated-enum-enum-conversion]
295 | *p = twist( p[M-N], p[0], state[0] );
| ~^~
src/MersenneTwister.h: In member function âvoid MTRand::save(uint32*)
constâ:
src/MersenneTwister.h:395:26: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
395 | register uint32 *sa = saveArray;
| ^~
src/MersenneTwister.h:396:32: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
396 | register const uint32 *s = state;
| ^
src/MersenneTwister.h:397:22: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
397 | register int i = N;
| ^
src/MersenneTwister.h: In member function âvoid MTRand::load(uint32*)â:
src/MersenneTwister.h:405:26: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
405 | register uint32 *s = state;
| ^
src/MersenneTwister.h:406:26: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
406 | register uint32 *la = loadArray;
| ^~
src/MersenneTwister.h:407:22: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
407 | register int i = N;
| ^
src/MersenneTwister.h: In function âstd::ostream& operator<<(std::ostream&,
const MTRand&)â:
src/MersenneTwister.h:416:40: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
416 | register const MTRand::uint32 *s = mtrand.state;
| ^
src/MersenneTwister.h:417:22: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
417 | register int i = mtrand.N;
| ^
src/MersenneTwister.h: In function âstd::istream& operator>>(std::istream&,
MTRand&)â:
src/MersenneTwister.h:425:34: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
425 | register MTRand::uint32 *s = mtrand.state;
| ^
src/MersenneTwister.h:426:22: warning: ISO C++17 does not allow âregisterâ
storage class specifier [-Wregister]
426 | register int i = mtrand.N;
| ^
src/paml.cpp: In function âint PMatUVRoot(double*, double, int, double*,
double*, double*)â:
src/paml.cpp:473:20: error: reference to âidentityâ is ambiguous
473 | if (t<1e-100) { identity (P, n); return(0); }
| ^~~~~~~~
⢠there are 2 candidates
In file included from /usr/include/c++/16/bits/iterator_concepts.h:40,
from /usr/include/c++/16/bits/stl_iterator_base_types.h:73,
from /usr/include/c++/16/bits/stl_construct.h:61,
from /usr/include/c++/16/bits/char_traits.h:59,
from /usr/include/c++/16/ios:44,
from /usr/include/c++/16/bits/ostream.h:43,
from /usr/include/c++/16/ostream:42,
from /usr/include/c++/16/iostream:43,
from src/indelible.cpp:116:
⢠candidate 1: âstruct std::identityâ
/usr/include/c++/16/bits/ranges_cmp.h:47:10:
47 | struct identity
| ^~~~~~~~
⢠candidate 2: âint identity(double*, int)â
src/paml.cpp:61:5:
61 | int identity (double x[], int n)
| ^~~~~~~~
make[1]: *** [Makefile:493: indelible-indelible.o] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j2 returned exit code 2
make: *** [debian/rules:7: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess failed with exit
status 2
--------------------------------------------------------------------------------
--- End Message ---
--- Begin Message ---
Source: indelible
Source-Version: 1.03-8
Done: Étienne Mollier <[email protected]>
We believe that the bug you reported is fixed in the latest version of
indelible, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <[email protected]> (supplier of updated indelible package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 06 Aug 2026 09:35:17 +0200
Source: indelible
Architecture: source
Version: 1.03-8
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Étienne Mollier <[email protected]>
Closes: 1143661
Changes:
indelible (1.03-8) unstable; urgency=medium
.
[ Andreas Tille ]
* Fix DEP3 headers
.
[ Étienne Mollier ]
* 0007-gcc-16.patch: new: fix build failure with gcc-16. (Closes: #1143661)
* d/u/metadata: document upstream repository and bugs database.
* d/control: bump to debhelper-compat 14.
This change involves activation of dh-sequence-single-binary.
Checksums-Sha1:
2a493df67320ee9117715bb8ac7a144f37a149a0 2164 indelible_1.03-8.dsc
39afbfff346946150ecb46bb8dc20bb71a30de4c 54144 indelible_1.03-8.debian.tar.xz
Checksums-Sha256:
8cdadc8072a13c0896256865a92c5dad589d057005e89e0748450d80d617e17a 2164
indelible_1.03-8.dsc
58fcc788ce4b04ae161581b270ba4affa3693c3be37da7b136a46f0601b1091c 54144
indelible_1.03-8.debian.tar.xz
Files:
4a900cc9768c7516e3c20b125f470a38 2164 science optional indelible_1.03-8.dsc
cd5d3c9c9e56544e872ffe9b151da098 54144 science optional
indelible_1.03-8.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=qQKj
-----END PGP SIGNATURE-----
pgpfyilJcHuCe.pgp
Description: PGP signature
--- End Message ---
