Your message dated Fri, 07 Aug 2026 08:21:34 +0000
with message-id <[email protected]>
and subject line Bug#1139604: fixed in h5py 3.16.0-4
has caused the Debian Bug report #1139604,
regarding h5py: FTBFS against HDF5 2.1.0
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1139604: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1139604
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: h5py
Version: 3.16.0-3
Severity: important
Tags: ftbfs patch
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0
currently in experimental, h5py FTBFS because its build toolchain
doesn't support this new major release.
The attached patch is a workaround for this issue and supports both
HDF5 1.14.6 in unstable and HDF5 2.1.0 in experimental.
Best,
_g.
- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)
Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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diff -Nru h5py-3.16.0/debian/changelog h5py-3.16.0/debian/changelog
--- h5py-3.16.0/debian/changelog 2026-05-13 13:25:13.000000000 +0200
+++ h5py-3.16.0/debian/changelog 2026-05-28 15:58:55.000000000 +0200
@@ -1,3 +1,10 @@
+h5py (3.16.0-3.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix FTBFS against HDF5 2.1.0
+
+ -- Gilles Filippini <[email protected]> Thu, 28 May 2026 15:58:55 +0200
+
h5py (3.16.0-3) unstable; urgency=medium
* update python3-mpi in debian/tests
diff -Nru h5py-3.16.0/debian/rules h5py-3.16.0/debian/rules
--- h5py-3.16.0/debian/rules 2026-05-13 13:25:13.000000000 +0200
+++ h5py-3.16.0/debian/rules 2026-05-28 15:58:42.000000000 +0200
@@ -6,6 +6,7 @@
include /usr/share/dpkg/architecture.mk
include /usr/share/dpkg/buildflags.mk
include /usr/share/dpkg/buildtools.mk
+include /usr/share/mpi-default-dev/debian_defaults
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
@@ -92,7 +93,7 @@
override_dh_auto_build: export http_proxy=127.0.0.1:9
override_dh_auto_build: export https_proxy=127.0.0.1:9
override_dh_auto_build:
- PYBUILD_NAME=$(PYBUILD_NAME_MPI) CC=h5pcc HDF5_USE_SHLIB=yes
HDF5_MPI=ON HDF5_PKGCONFIG_NAME=hdf5-mpi H5PY_SYSTEM_LZF=1 dh_auto_build -D
$(BUILD_DIR_MPI)
+ PYBUILD_NAME=$(PYBUILD_NAME_MPI) CC=h5pcc HDF5_USE_SHLIB=yes
HDF5_MPI=ON HDF5_INCLUDEDIR=/usr/include/hdf5/$(ARCH_DEFAULT_MPI_IMPL)
HDF5_LIBDIR=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/$(ARCH_DEFAULT_MPI_IMPL)
H5PY_SYSTEM_LZF=1 dh_auto_build -D $(BUILD_DIR_MPI)
for DIR in $$(find .pybuild/cpython3*mpi -name build); do \
cp -r $(CURDIR)/debian/wrapper_module/h5py/* $$DIR/h5py/; \
done
@@ -103,7 +104,7 @@
execute_after_dh_auto_build-arch: export http_proxy=127.0.0.1:9
execute_after_dh_auto_build-arch: export https_proxy=127.0.0.1:9
execute_after_dh_auto_build-arch:
- PYBUILD_NAME=$(PYBUILD_NAME_SERIAL) HDF5_PKGCONFIG_NAME=hdf5-serial
HDF5_USE_SHLIB=yes H5PY_SYSTEM_LZF=1 dh_auto_build -a -D $(BUILD_DIR_SERIAL)
+ PYBUILD_NAME=$(PYBUILD_NAME_SERIAL)
HDF5_INCLUDEDIR=/usr/include/hdf5/serial
HDF5_LIBDIR=/usr/lib/$(DEB_HOST_MULTIARCH)/hdf5/serial HDF5_USE_SHLIB=yes
H5PY_SYSTEM_LZF=1 dh_auto_build -a -D $(BUILD_DIR_SERIAL)
for DIR in $$(find .pybuild/cpython3*serial -name build); do \
cp -r $(CURDIR)/debian/wrapper_module/h5py/* $$DIR/h5py/; \
done
--- End Message ---
--- Begin Message ---
Source: h5py
Source-Version: 3.16.0-4
Done: Drew Parsons <[email protected]>
We believe that the bug you reported is fixed in the latest version of
h5py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated h5py package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 06 Aug 2026 18:32:22 +0200
Source: h5py
Architecture: source
Version: 3.16.0-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Drew Parsons <[email protected]>
Closes: 1139604
Changes:
h5py (3.16.0-4) unstable; urgency=medium
.
[ Gilles Filippini ]
* Fix FTBFS against HDF5 2.1.0. Closes: #1139604
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