Your message dated Mon, 6 Nov 2006 21:12:20 -0600
with message-id <[EMAIL PROTECTED]>
and subject line graphviz: graphviz.pc not installed
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--- Begin Message ---
Package: graphviz
Version: 2.8-2.3
Severity: important
To the R/BioConductor package interfacing graphviz, its configure relies on
querying pkg-config. But witness:
[EMAIL PROTECTED]:~> pkg-config --libs graphviz
Package graphviz was not found in the pkg-config search path.
Perhaps you should add the directory containing `graphviz.pc'
to the PKG_CONFIG_PATH environment variable
That makes it pretty useless as a library provides, as the install from R
falls flat on its face:
> update.packages(lib.loc="/usr/local/lib/R/site-library")
Rgraphviz :
Version 1.5.0 installed in /usr/local/lib/R/site-library
Version 1.12.1 available at http://www.bioconductor.org
Update (y/N/c)? y
trying URL 'http://www.bioconductor.org/src/contrib/Rgraphviz_1.12.1.tar.gz'
Content type 'application/x-gzip' length 1504650 bytes
opened URL
==================================================
downloaded 1469Kb
* Installing *source* package 'Rgraphviz' ...
checking for pkg-config... /usr/bin/pkg-config
Package libgvc was not found in the pkg-config search path.
Perhaps you should add the directory containing `libgvc.pc'
to the PKG_CONFIG_PATH environment variable
No package 'libgvc' found
configure: pkg-config was not able to find graphviz. Verify graphviz is
installed and that PKG_CONFIG_PATH is correct.
checking for dotneato-config... no
configure: dotneato-config not found in PATH. Try specifying location of
graphviz using --with-graphviz
configure: error: graphviz was not found.
ERROR: configuration failed for package 'Rgraphviz'
** Removing '/usr/local/lib/R/site-library/Rgraphviz'
** Restoring previous '/usr/local/lib/R/site-library/Rgraphviz'
And libgvc is installed by graphviz so this is really too bad.
Dirk
-- System Information:
Debian Release: testing/unstable
APT prefers testing-proposed-updates
APT policy: (500, 'testing-proposed-updates'), (500, 'testing')
Architecture: i386 (i686)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.15-1-k7-smp
Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968)
Versions of packages graphviz depends on:
ii libc6 2.3.6.ds1-4 GNU C Library: Shared libraries
ii libexpat1 1.95.8-3.3 XML parsing C library - runtime li
ii libfontconfig1 2.4.1-2 generic font configuration library
ii libfreetype6 2.2.1-5 FreeType 2 font engine, shared lib
ii libgcc1 1:4.1.1-13 GCC support library
ii libice6 1:1.0.1-2 X11 Inter-Client Exchange library
ii libjpeg62 6b-13 The Independent JPEG Group's JPEG
ii libltdl3 1.5.22-4 A system independent dlopen wrappe
ii libperl5.8 5.8.8-6.1 Shared Perl library
ii libpng12-0 1.2.8rel-5.2 PNG library - runtime
ii libsm6 1:1.0.1-3 X11 Session Management library
ii libstdc++6 4.1.1-13 The GNU Standard C++ Library v3
ii libx11-6 2:1.0.0-9 X11 client-side library
ii libxaw7 1:1.0.2-4 X11 Athena Widget library
ii libxext6 1:1.0.1-2 X11 miscellaneous extension librar
ii libxmu6 1:1.0.2-2 X11 miscellaneous utility library
ii libxpm4 1:3.5.5-2 X11 pixmap library
ii libxt6 1:1.0.2-2 X11 toolkit intrinsics library
ii tk8.4 8.4.12-1 Tk toolkit for Tcl and X11, v8.4 -
ii zlib1g 1:1.2.3-13 compression library - runtime
graphviz recommends no packages.
-- no debconf information
--
Hell, there are no rules here - we're trying to accomplish something.
-- Thomas A. Edison
--- End Message ---
--- Begin Message ---
On 7 November 2006 at 03:52, Cyril Brulebois wrote:
| Dirk Eddelbuettel <[EMAIL PROTECTED]> (14/10/2006):
| > Severity: important
| I'd say ``not a bug''.
|
| > [EMAIL PROTECTED]:~> pkg-config --libs graphviz
| > Package graphviz was not found in the pkg-config search path.
| > Perhaps you should add the directory containing `graphviz.pc'
| > to the PKG_CONFIG_PATH environment variable
| Right, but the .pc files are:
| libagraph.pc
| libcdt.pc
| libgraph.pc
| libgvc.pc
| libpathplan.pc
|
| So you won't ever get any answer for `graphviz' through `pkg-config'.
|
| > * Installing *source* package 'Rgraphviz' ...
| > checking for pkg-config... /usr/bin/pkg-config
| > Package libgvc was not found in the pkg-config search path.
| > Perhaps you should add the directory containing `libgvc.pc'
| > to the PKG_CONFIG_PATH environment variable
| > No package 'libgvc' found
| The .pc file(s) is (are) missing because...
|
| > And libgvc is installed by graphviz so this is really too bad.
| ... you need the -dev package as well, which contains them. Once this
| package installed, you'll get:
| [EMAIL PROTECTED]:~$ pkg-config --libs libgvc
| -L/usr/lib/graphviz -lgvc
Quite right. Rather embarrassing that I overlooked that...
Thanks for catching it, and down one on the RC count!
Dirk
--
Hell, there are no rules here - we're trying to accomplish something.
-- Thomas A. Edison
--- End Message ---
