Source: nitime
Version: 0.10.2-2
Severity: serious
Tags: ftbfs
Justification: FTBFS
Dear maintainer,
During a test rebuild, nitime failed to rebuild.
-------------------------------------------------------------------------------
[...]
dh_auto_test -O--buildsystem=pybuild
I: pybuild base:311: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build;
python3.12 -m pytest
============================= test session starts ==============================
platform linux -- Python 3.12.6, pytest-8.3.3, pluggy-1.5.0
rootdir: /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build
configfile: pyproject.toml
plugins: typeguard-4.3.0
collected 124 items
nitime/algorithms/tests/test_autoregressive.py ..... [ 4%]
nitime/algorithms/tests/test_coherence.py ..........s.... [ 16%]
nitime/algorithms/tests/test_correlation.py . [ 16%]
nitime/algorithms/tests/test_entropy.py ..... [ 20%]
nitime/algorithms/tests/test_event_related.py . [ 21%]
nitime/algorithms/tests/test_spectral.py ................ [ 34%]
nitime/analysis/tests/test_base.py . [ 35%]
nitime/analysis/tests/test_coherence.py ...... [ 40%]
nitime/analysis/tests/test_correlation.py . [ 41%]
nitime/analysis/tests/test_granger.py .. [ 42%]
nitime/analysis/tests/test_snr.py . [ 43%]
nitime/fmri/tests/test_io.py . [ 44%]
nitime/tests/test_algorithms.py ........ [ 50%]
nitime/tests/test_analysis.py ........ [ 57%]
nitime/tests/test_descriptors.py . [ 58%]
nitime/tests/test_lazy.py .. [ 59%]
nitime/tests/test_timeseries.py .................................... [ 88%]
nitime/tests/test_utils.py ..........F [ 97%]
nitime/tests/test_viz.py ... [100%]
=================================== FAILURES ===================================
___________________________ test_detect_lines_2dmode ___________________________
def test_detect_lines_2dmode():
"""
Test multi-sequence operation
"""
N = 1000
sig = np.cos( 2*np.pi*np.arange(N) * 20./N ) + np.random.randn(N) * .01
sig2d = np.row_stack( (sig, sig, sig) )
lines = utils.detect_lines(sig2d, (4, 8), low_bias=True, NFFT=2**12)
npt.assert_(len(lines)==3, 'Detect lines failed multi-sequence mode')
consistent1 = (lines[0][0] == lines[1][0]).all() and \
(lines[1][0] == lines[2][0]).all()
consistent2 = (lines[0][1] == lines[1][1]).all() and \
(lines[1][1] == lines[2][1]).all()
> npt.assert_(consistent1 and consistent2, 'Inconsistent results')
E AssertionError: Inconsistent results
nitime/tests/test_utils.py:304: AssertionError
=============================== warnings summary ===============================
nitime/algorithms/event_related.py:13
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/event_related.py:13:
SyntaxWarning: invalid escape sequence '\h'
"""
nitime/analysis/tests/test_coherence.py::test_CoherenceAnalyzer
nitime/analysis/tests/test_coherence.py::test_SparseCoherenceAnalyzer
nitime/analysis/tests/test_coherence.py::test_SeedCoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:200:
RuntimeWarning: invalid value encountered in divide
delay[i, j] = this_phase / (2 * np.pi * self.frequencies)
nitime/analysis/tests/test_coherence.py::test_CoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:200:
RuntimeWarning: divide by zero encountered in divide
delay[i, j] = this_phase / (2 * np.pi * self.frequencies)
nitime/analysis/tests/test_coherence.py::test_CoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/cohere.py:699:
RuntimeWarning: divide by zero encountered in divide
return (((np.abs(Rxy - Rxr * Rry)) ** 2) /
nitime/analysis/tests/test_coherence.py::test_CoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/cohere.py:699:
RuntimeWarning: invalid value encountered in divide
return (((np.abs(Rxy - Rxr * Rry)) ** 2) /
nitime/analysis/tests/test_coherence.py::test_SparseCoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:523:
RuntimeWarning: invalid value encountered in divide
return self.relative_phases / (2 * np.pi * self.frequencies)
nitime/analysis/tests/test_coherence.py::test_SeedCoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:730:
RuntimeWarning: invalid value encountered in divide
return self.relative_phases / (2 * np.pi * self.frequencies)
nitime/analysis/tests/test_coherence.py::test_SeedCoherenceAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/analysis/coherence.py:94:
RuntimeWarning: In nitime.analysis, the provided input time-series is shorter
than the requested NFFT + n_overlap. All coherence values will be set to 1.
warnings.warn(e_s, RuntimeWarning)
nitime/tests/test_analysis.py::test_MorletWaveletAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/wavelet.py:77:
RuntimeWarning: divide by zero encountered in log
wf = (2 * np.exp(-(np.log(f) - np.log(f0)) ** 2 / (2 * sfl ** 2)) *
nitime/tests/test_analysis.py::test_MorletWaveletAnalyzer
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/nitime/algorithms/wavelet.py:77:
RuntimeWarning: invalid value encountered in log
wf = (2 * np.exp(-(np.log(f) - np.log(f0)) ** 2 / (2 * sfl ** 2)) *
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED nitime/tests/test_utils.py::test_detect_lines_2dmode - AssertionError:...
============ 1 failed, 122 passed, 1 skipped, 12 warnings in 29.65s ============
E: pybuild pybuild:389: test: plugin pyproject failed with: exit code=1: cd
/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build; python3.12 -m pytest
dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.12
returned exit code 13
make: *** [debian/rules:16: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2024-09-19T22:05:12Z
-------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here (for the next 30 days):
https://debusine.debian.net/artifact/799381/
About the archive rebuild: The build was made on debusine.debian.net,
on arm64 using sbuild.
You can find the build task here:
https://debusine.debian.net/work-request/38947/
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks,
Stefano
