Package: libpdl-io-hdf5-perl
Version: 0.6-1.1+b1
Severity: normal
Building the package with pbuilder(unstable) + Gcc 4.7 fails:
HDF5.xs:46:2: warning: passing argument 2 of 'H5Eset_auto2' from
incompatible pointer type [enabled by default]
/usr/include/H5Epublic.h:174:9: note: expected 'H5E_auto2_t' but argument
is of type 'struct _IO_FILE *'
HDF5.xs:46:2: error: too few arguments to function 'H5Eset_auto2'
/usr/include/H5Epublic.h:174:9: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Dcreate':
HDF5.xs:1239:2: error: too few arguments to function 'H5Dcreate2'
/usr/include/H5Dpublic.h:104:8: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Dopen':
HDF5.xs:1255:2: error: too few arguments to function 'H5Dopen2'
/usr/include/H5Dpublic.h:108:8: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Gcreate':
HDF5.xs:1358:2: error: too few arguments to function 'H5Gcreate2'
/usr/include/H5Gpublic.h:75:8: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Gopen':
HDF5.xs:1374:2: error: too few arguments to function 'H5Gopen2'
/usr/include/H5Gpublic.h:78:8: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Acreate':
HDF5.xs:1470:2: error: too few arguments to function 'H5Acreate2'
/usr/include/H5Apublic.h:44:8: note: declared here
make[2]: *** [HDF5.o] Error 1
make[2]: Leaving directory `/tmp/buildd/libpdl-io-hdf5-perl-0.6'
dh_auto_build: make -j1 returned exit code 2
make[1]: *** [build] Error 2
make[1]: Leaving directory `/tmp/buildd/libpdl-io-hdf5-perl-0.6'
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
I: unmounting /var/cache/pbuilder/ccache filesystem
I: unmounting dev/pts filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//10221 and its
subdirectories
dpkg-buildpackage: source only, diff-only upload (original source NOT included)
I: using fakeroot in build.
I: Current time: Fri Apr 27 22:28:32 EEST 2012
I: pbuilder-time-stamp: 1335554912
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/base.tgz]
I: creating local configuration
I: copying local configuration
I: mounting /proc filesystem
I: mounting /dev/pts filesystem
I: Mounting /var/cache/pbuilder/ccache
I: policy-rc.d already exists
I: Obtaining the cached apt archive contents
I: Setting up ccache
I: Installing the build-deps
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: i386
Maintainer: Debian Pbuilder Team <pbuilder-ma...@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by
pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper (>= 7), perl, pdl, libhdf5-serial-dev, dpatch
dpkg-deb: building package `pbuilder-satisfydepends-dummy' in
`/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 11072 files and directories currently installed.)
Unpacking pbuilder-satisfydepends-dummy (from
.../pbuilder-satisfydepends-dummy.deb) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring
anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper (>= 7); however:
Package debhelper is not installed.
pbuilder-satisfydepends-dummy depends on pdl; however:
Package pdl is not installed.
pbuilder-satisfydepends-dummy depends on libhdf5-serial-dev; however:
Package libhdf5-serial-dev is not installed.
pbuilder-satisfydepends-dummy depends on dpatch; however:
Package dpatch is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
The following NEW packages will be installed:
adduser{a} bsdmainutils{a} debhelper{a} dpatch{a} fftw2{a} file{a}
fontconfig-config{a} freeglut3{a} gettext{a} gettext-base{a}
groff-base{a} hdf5-helpers{a} html2text{a} intltool-debian{a}
libcroco3{a} libcsiro0{a} libdrm2{a} libexpat1{a} libffi5{a}
libfontconfig1{a} libfreetype6{a} libgd2-xpm{a} libgfortran3{a}
libgl1-mesa-glx{a} libglapi-mesa{a} libglib2.0-0{a} libglu1-mesa{a}
libgsl0ldbl{a} libhdf4-0-alt{a} libhdf5-7{a} libhdf5-dev{a}
libhdf5-serial-dev{a} libibverbs1{a} libjpeg8{a} libjpeg8-dev{a}
libltdl7{a} libmagic1{a} libnuma1{a} libopengl-perl{a} libopenmpi1.3
libpcre3{a} libpipeline1{a} libplplot11{a} libpng12-0{a} libproj0{a}
libqhull5{a} libqsastime0{a} libterm-readkey-perl{a} libtorque2{a}
libunistring0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a}
libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a}
libxml2{a} libxpm4{a} libxxf86vm1{a} man-db{a} pdl{a} po-debconf{a}
proj-data{a} ttf-dejavu-core{a} zlib1g-dev{a}
0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded.
Need to get 17.8 MB/33.4 MB of archives. After unpacking 95.9 MB will be used.
Writing extended state information...
Get: 1 http://ftp.fi.debian.org/debian/ unstable/main libgfortran3 i386 4.7.0-4
[337 kB]
Get: 2 http://ftp.fi.debian.org/debian/ unstable/main libltdl7 i386 2.4.2-1
[352 kB]
Get: 3 http://ftp.fi.debian.org/debian/ unstable/main libxpm4 i386 1:3.5.10-1
[50.0 kB]
Get: 4 http://ftp.fi.debian.org/debian/ unstable/main adduser all 3.113+nmu1
[238 kB]
Get: 5 http://ftp.fi.debian.org/debian/ unstable/main hdf5-helpers i386 1.8.8-9
[32.8 kB]
Get: 6 http://ftp.fi.debian.org/debian/ unstable/main libqhull5 i386 2009.1-3
[161 kB]
Get: 7 http://ftp.fi.debian.org/debian/ unstable/main libcsiro0 i386 5.9.9-4
[57.4 kB]
Get: 8 http://ftp.fi.debian.org/debian/ unstable/main libgd2-xpm i386
2.0.36~rc1~dfsg-6+b1 [232 kB]
Get: 9 http://ftp.fi.debian.org/debian/ unstable/main libgsl0ldbl i386
1.15+dfsg-1 [1009 kB]
Get: 10 http://ftp.fi.debian.org/debian/ unstable/main libhdf5-7 i386 1.8.8-9
[1331 kB]
Get: 11 http://ftp.fi.debian.org/debian/ unstable/main libhdf5-dev i386 1.8.8-9
[2492 kB]
Get: 12 http://ftp.fi.debian.org/debian/ unstable/main libhdf5-serial-dev i386
1.8.8-9 [24.3 kB]
Get: 13 http://ftp.fi.debian.org/debian/ unstable/main libnuma1 i386
2.0.8~rc3-1 [34.2 kB]
Get: 14 http://ftp.fi.debian.org/debian/ unstable/main libopengl-perl i386
0.66+dfsg-1 [491 kB]
Get: 15 http://ftp.fi.debian.org/debian/ unstable/main libqsastime0 i386
5.9.9-4 [40.5 kB]
Get: 16 http://ftp.fi.debian.org/debian/ unstable/main libplplot11 i386 5.9.9-4
[501 kB]
Get: 17 http://ftp.fi.debian.org/debian/ unstable/main libterm-readkey-perl
i386 2.30-4+b2 [32.0 kB]
Get: 18 http://ftp.fi.debian.org/debian/ unstable/main libtorque2 i386
2.4.16+dfsg-1 [116 kB]
Get: 19 http://ftp.fi.debian.org/debian/ unstable/main libibverbs1 i386 1.1.6-1
[35.9 kB]
Get: 20 http://ftp.fi.debian.org/debian/ unstable/main libopenmpi1.3 i386
1.4.3-2.1 [1275 kB]
Get: 21 http://ftp.fi.debian.org/debian/ unstable/main fftw2 i386 2.1.5-1 [232
kB]
Get: 22 http://ftp.fi.debian.org/debian/ unstable/main libhdf4-0-alt i386
4.2r4-13 [297 kB]
Get: 23 http://ftp.fi.debian.org/debian/ unstable/main proj-data i386 4.7.0-1
[2932 kB]
Get: 24 http://ftp.fi.debian.org/debian/ unstable/main libproj0 i386 4.7.0-1
[119 kB]
Get: 25 http://ftp.fi.debian.org/debian/ unstable/main pdl i386 1:2.4.10+dfsg-1
[5373 kB]
Fetched 17.8 MB in 29s (603 kB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package libpipeline1:i386.
(Reading database ... 11072 files and directories currently installed.)
Unpacking libpipeline1:i386 (from .../libpipeline1_1.2.1-1_i386.deb) ...
Selecting previously unselected package libmagic1:i386.
Unpacking libmagic1:i386 (from .../libmagic1_5.11-1_i386.deb) ...
Selecting previously unselected package libpcre3:i386.
Unpacking libpcre3:i386 (from .../libpcre3_1%3a8.30-4_i386.deb) ...
Selecting previously unselected package libxml2:i386.
Unpacking libxml2:i386 (from .../libxml2_2.7.8.dfsg-9_i386.deb) ...
Selecting previously unselected package libffi5:i386.
Unpacking libffi5:i386 (from .../libffi5_3.0.10-3_i386.deb) ...
Selecting previously unselected package libglib2.0-0:i386.
Unpacking libglib2.0-0:i386 (from .../libglib2.0-0_2.32.0-4_i386.deb) ...
Selecting previously unselected package libcroco3:i386.
Unpacking libcroco3:i386 (from .../libcroco3_0.6.5-1_i386.deb) ...
Selecting previously unselected package libdrm2:i386.
Unpacking libdrm2:i386 (from .../libdrm2_2.4.33-1_i386.deb) ...
Selecting previously unselected package libexpat1:i386.
Unpacking libexpat1:i386 (from .../libexpat1_2.1.0-1_i386.deb) ...
Selecting previously unselected package libfreetype6:i386.
Unpacking libfreetype6:i386 (from .../libfreetype6_2.4.9-1_i386.deb) ...
Selecting previously unselected package ttf-dejavu-core.
Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_all.deb) ...
Selecting previously unselected package fontconfig-config.
Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3.1_all.deb) ...
Selecting previously unselected package libfontconfig1:i386.
Unpacking libfontconfig1:i386 (from .../libfontconfig1_2.8.0-3.1_i386.deb) ...
Selecting previously unselected package libgfortran3:i386.
Unpacking libgfortran3:i386 (from .../libgfortran3_4.7.0-4_i386.deb) ...
Selecting previously unselected package libglapi-mesa:i386.
Unpacking libglapi-mesa:i386 (from .../libglapi-mesa_7.11.2-1_i386.deb) ...
Selecting previously unselected package libxau6:i386.
Unpacking libxau6:i386 (from .../libxau6_1%3a1.0.7-1_i386.deb) ...
Selecting previously unselected package libxdmcp6:i386.
Unpacking libxdmcp6:i386 (from .../libxdmcp6_1%3a1.1.1-1_i386.deb) ...
Selecting previously unselected package libxcb1:i386.
Unpacking libxcb1:i386 (from .../libxcb1_1.8.1-1_i386.deb) ...
Selecting previously unselected package libx11-data.
Unpacking libx11-data (from .../libx11-data_2%3a1.4.99.901-1_all.deb) ...
Selecting previously unselected package libx11-6:i386.
Unpacking libx11-6:i386 (from .../libx11-6_2%3a1.4.99.901-1_i386.deb) ...
Selecting previously unselected package libxfixes3:i386.
Unpacking libxfixes3:i386 (from .../libxfixes3_1%3a5.0-4_i386.deb) ...
Selecting previously unselected package libxdamage1:i386.
Unpacking libxdamage1:i386 (from .../libxdamage1_1%3a1.1.3-2_i386.deb) ...
Selecting previously unselected package libxext6:i386.
Unpacking libxext6:i386 (from .../libxext6_2%3a1.3.1-2_i386.deb) ...
Selecting previously unselected package libxxf86vm1:i386.
Unpacking libxxf86vm1:i386 (from .../libxxf86vm1_1%3a1.1.1-2_i386.deb) ...
Selecting previously unselected package libgl1-mesa-glx:i386.
Unpacking libgl1-mesa-glx:i386 (from .../libgl1-mesa-glx_7.11.2-1_i386.deb) ...
Selecting previously unselected package libglu1-mesa:i386.
Unpacking libglu1-mesa:i386 (from .../libglu1-mesa_7.11.2-1_i386.deb) ...
Selecting previously unselected package libjpeg8:i386.
Unpacking libjpeg8:i386 (from .../libjpeg8_8d-1_i386.deb) ...
Selecting previously unselected package libltdl7:i386.
Unpacking libltdl7:i386 (from .../libltdl7_2.4.2-1_i386.deb) ...
Selecting previously unselected package libpng12-0:i386.
Unpacking libpng12-0:i386 (from .../libpng12-0_1.2.49-1_i386.deb) ...
Selecting previously unselected package libunistring0:i386.
Unpacking libunistring0:i386 (from .../libunistring0_0.9.3-5_i386.deb) ...
Selecting previously unselected package libxi6:i386.
Unpacking libxi6:i386 (from .../libxi6_2%3a1.6.0-1_i386.deb) ...
Selecting previously unselected package libxpm4:i386.
Unpacking libxpm4:i386 (from .../libxpm4_1%3a3.5.10-1_i386.deb) ...
Selecting previously unselected package adduser.
Unpacking adduser (from .../adduser_3.113+nmu1_all.deb) ...
Selecting previously unselected package bsdmainutils.
Unpacking bsdmainutils (from .../bsdmainutils_9.0.1_i386.deb) ...
Selecting previously unselected package groff-base.
Unpacking groff-base (from .../groff-base_1.21-7_i386.deb) ...
Selecting previously unselected package man-db.
Unpacking man-db (from .../man-db_2.6.1-2_i386.deb) ...
Selecting previously unselected package file.
Unpacking file (from .../archives/file_5.11-1_i386.deb) ...
Selecting previously unselected package gettext-base.
Unpacking gettext-base (from .../gettext-base_0.18.1.1-5_i386.deb) ...
Selecting previously unselected package html2text.
Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ...
Selecting previously unselected package gettext.
Unpacking gettext (from .../gettext_0.18.1.1-5_i386.deb) ...
Selecting previously unselected package intltool-debian.
Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb)
...
Selecting previously unselected package po-debconf.
Unpacking po-debconf (from .../po-debconf_1.0.16+nmu2_all.deb) ...
Selecting previously unselected package debhelper.
Unpacking debhelper (from .../debhelper_9.20120419_all.deb) ...
Selecting previously unselected package dpatch.
Unpacking dpatch (from .../archives/dpatch_2.0.35_all.deb) ...
Selecting previously unselected package freeglut3.
Unpacking freeglut3 (from .../freeglut3_2.6.0-1.1_i386.deb) ...
Selecting previously unselected package hdf5-helpers.
Unpacking hdf5-helpers (from .../hdf5-helpers_1.8.8-9_i386.deb) ...
Selecting previously unselected package libqhull5.
Unpacking libqhull5 (from .../libqhull5_2009.1-3_i386.deb) ...
Selecting previously unselected package libcsiro0.
Unpacking libcsiro0 (from .../libcsiro0_5.9.9-4_i386.deb) ...
Selecting previously unselected package libgd2-xpm.
Unpacking libgd2-xpm (from .../libgd2-xpm_2.0.36~rc1~dfsg-6+b1_i386.deb) ...
Selecting previously unselected package libgsl0ldbl.
Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg-1_i386.deb) ...
Selecting previously unselected package libhdf5-7.
Unpacking libhdf5-7 (from .../libhdf5-7_1.8.8-9_i386.deb) ...
Selecting previously unselected package zlib1g-dev:i386.
Unpacking zlib1g-dev:i386 (from .../zlib1g-dev_1%3a1.2.6.dfsg-2_i386.deb) ...
Selecting previously unselected package libjpeg8-dev:i386.
Unpacking libjpeg8-dev:i386 (from .../libjpeg8-dev_8d-1_i386.deb) ...
Selecting previously unselected package libhdf5-dev.
Unpacking libhdf5-dev (from .../libhdf5-dev_1.8.8-9_i386.deb) ...
Selecting previously unselected package libhdf5-serial-dev.
Unpacking libhdf5-serial-dev (from .../libhdf5-serial-dev_1.8.8-9_i386.deb) ...
Selecting previously unselected package libnuma1.
Unpacking libnuma1 (from .../libnuma1_2.0.8~rc3-1_i386.deb) ...
Selecting previously unselected package libopengl-perl.
Unpacking libopengl-perl (from .../libopengl-perl_0.66+dfsg-1_i386.deb) ...
Selecting previously unselected package libqsastime0.
Unpacking libqsastime0 (from .../libqsastime0_5.9.9-4_i386.deb) ...
Selecting previously unselected package libplplot11.
Unpacking libplplot11 (from .../libplplot11_5.9.9-4_i386.deb) ...
Selecting previously unselected package libterm-readkey-perl.
Unpacking libterm-readkey-perl (from
.../libterm-readkey-perl_2.30-4+b2_i386.deb) ...
Selecting previously unselected package libtorque2.
Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1_i386.deb) ...
Selecting previously unselected package libibverbs1.
Unpacking libibverbs1 (from .../libibverbs1_1.1.6-1_i386.deb) ...
Selecting previously unselected package libopenmpi1.3.
Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.3-2.1_i386.deb) ...
Selecting previously unselected package fftw2.
Unpacking fftw2 (from .../fftw2_2.1.5-1_i386.deb) ...
Selecting previously unselected package libhdf4-0-alt.
Unpacking libhdf4-0-alt (from .../libhdf4-0-alt_4.2r4-13_i386.deb) ...
Selecting previously unselected package proj-data.
Unpacking proj-data (from .../proj-data_4.7.0-1_i386.deb) ...
Selecting previously unselected package libproj0.
Unpacking libproj0 (from .../libproj0_4.7.0-1_i386.deb) ...
Selecting previously unselected package pdl.
Unpacking pdl (from .../pdl_1%3a2.4.10+dfsg-1_i386.deb) ...
Setting up libpipeline1:i386 (1.2.1-1) ...
Setting up libmagic1:i386 (5.11-1) ...
Setting up libpcre3:i386 (1:8.30-4) ...
Setting up libxml2:i386 (2.7.8.dfsg-9) ...
Setting up libffi5:i386 (3.0.10-3) ...
Setting up libglib2.0-0:i386 (2.32.0-4) ...
No schema files found: doing nothing.
Setting up libcroco3:i386 (0.6.5-1) ...
Setting up libdrm2:i386 (2.4.33-1) ...
Setting up libexpat1:i386 (2.1.0-1) ...
Setting up libfreetype6:i386 (2.4.9-1) ...
Setting up ttf-dejavu-core (2.33-2) ...
Setting up fontconfig-config (2.8.0-3.1) ...
Setting up libfontconfig1:i386 (2.8.0-3.1) ...
Setting up libgfortran3:i386 (4.7.0-4) ...
Setting up libglapi-mesa:i386 (7.11.2-1) ...
Setting up libxau6:i386 (1:1.0.7-1) ...
Setting up libxdmcp6:i386 (1:1.1.1-1) ...
Setting up libxcb1:i386 (1.8.1-1) ...
Setting up libx11-data (2:1.4.99.901-1) ...
Setting up libx11-6:i386 (2:1.4.99.901-1) ...
Setting up libxfixes3:i386 (1:5.0-4) ...
Setting up libxdamage1:i386 (1:1.1.3-2) ...
Setting up libxext6:i386 (2:1.3.1-2) ...
Setting up libxxf86vm1:i386 (1:1.1.1-2) ...
Setting up libgl1-mesa-glx:i386 (7.11.2-1) ...
Setting up libglu1-mesa:i386 (7.11.2-1) ...
Setting up libjpeg8:i386 (8d-1) ...
Setting up libltdl7:i386 (2.4.2-1) ...
Setting up libpng12-0:i386 (1.2.49-1) ...
Setting up libunistring0:i386 (0.9.3-5) ...
Setting up libxi6:i386 (2:1.6.0-1) ...
Setting up libxpm4:i386 (1:3.5.10-1) ...
Setting up adduser (3.113+nmu1) ...
Setting up bsdmainutils (9.0.1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write)
in auto mode.
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in
auto mode.
Setting up groff-base (1.21-7) ...
Setting up man-db (2.6.1-2) ...
Building database of manual pages ...
Setting up file (5.11-1) ...
Setting up gettext-base (0.18.1.1-5) ...
Setting up html2text (1.3.2a-15) ...
Setting up gettext (0.18.1.1-5) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu2) ...
Setting up debhelper (9.20120419) ...
Setting up dpatch (2.0.35) ...
Setting up freeglut3 (2.6.0-1.1) ...
Setting up hdf5-helpers (1.8.8-9) ...
Setting up libqhull5 (2009.1-3) ...
Setting up libcsiro0 (5.9.9-4) ...
Setting up libgd2-xpm (2.0.36~rc1~dfsg-6+b1) ...
Setting up libgsl0ldbl (1.15+dfsg-1) ...
Setting up libhdf5-7 (1.8.8-9) ...
Setting up zlib1g-dev:i386 (1:1.2.6.dfsg-2) ...
Setting up libjpeg8-dev:i386 (8d-1) ...
Setting up libhdf5-dev (1.8.8-9) ...
Setting up libhdf5-serial-dev (1.8.8-9) ...
Setting up libnuma1 (2.0.8~rc3-1) ...
Setting up libopengl-perl (0.66+dfsg-1) ...
Setting up libqsastime0 (5.9.9-4) ...
Setting up libplplot11 (5.9.9-4) ...
Setting up libterm-readkey-perl (2.30-4+b2) ...
Setting up libtorque2 (2.4.16+dfsg-1) ...
Setting up libibverbs1 (1.1.6-1) ...
Setting up libopenmpi1.3 (1.4.3-2.1) ...
Setting up fftw2 (2.1.5-1) ...
Setting up libhdf4-0-alt (4.2r4-13) ...
Setting up proj-data (4.7.0-1) ...
Setting up libproj0 (4.7.0-1) ...
Setting up pdl (1:2.4.10+dfsg-1) ...
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
-> Finished parsing the build-deps
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
fakeroot
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/107 kB of archives.
After this operation, 310 kB of additional disk space will be used.
Selecting previously unselected package fakeroot.
(Reading database ... 14301 files and directories currently installed.)
Unpacking fakeroot (from .../fakeroot_1.18.3-1_i386.deb) ...
Processing triggers for man-db ...
Setting up fakeroot (1.18.3-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot
(fakeroot) in auto mode.
I: Copying back the cached apt archive contents
I: new cache content libxpm4_1%3a3.5.10-1_i386.deb added
I: new cache content libgd2-xpm_2.0.36~rc1~dfsg-6+b1_i386.deb added
I: new cache content libqsastime0_5.9.9-4_i386.deb added
I: new cache content libhdf4-0-alt_4.2r4-13_i386.deb added
I: new cache content libhdf5-7_1.8.8-9_i386.deb added
I: new cache content adduser_3.113+nmu1_all.deb added
I: new cache content libhdf5-serial-dev_1.8.8-9_i386.deb added
I: new cache content libgfortran3_4.7.0-4_i386.deb added
I: new cache content libterm-readkey-perl_2.30-4+b2_i386.deb added
I: new cache content pdl_1%3a2.4.10+dfsg-1_i386.deb added
I: new cache content fftw2_2.1.5-1_i386.deb added
I: new cache content libltdl7_2.4.2-1_i386.deb added
I: new cache content libplplot11_5.9.9-4_i386.deb added
I: new cache content proj-data_4.7.0-1_i386.deb added
I: new cache content libproj0_4.7.0-1_i386.deb added
I: new cache content libopenmpi1.3_1.4.3-2.1_i386.deb added
I: new cache content hdf5-helpers_1.8.8-9_i386.deb added
I: new cache content libopengl-perl_0.66+dfsg-1_i386.deb added
I: new cache content libgsl0ldbl_1.15+dfsg-1_i386.deb added
I: new cache content libnuma1_2.0.8~rc3-1_i386.deb added
I: new cache content libcsiro0_5.9.9-4_i386.deb added
I: new cache content libtorque2_2.4.16+dfsg-1_i386.deb added
I: new cache content libhdf5-dev_1.8.8-9_i386.deb added
I: new cache content libqhull5_2009.1-3_i386.deb added
I: new cache content libibverbs1_1.1.6-1_i386.deb added
I: Copying source file
I: copying [../libpdl-io-hdf5-perl_0.6-1.1.dsc]
I: copying [../libpdl-io-hdf5-perl_0.6.orig.tar.gz]
I: copying [../libpdl-io-hdf5-perl_0.6-1.1.diff.gz]
I: Extracting source
dpkg-source: warning: extracting unsigned source package
(libpdl-io-hdf5-perl_0.6-1.1.dsc)
dpkg-source: info: extracting libpdl-io-hdf5-perl in libpdl-io-hdf5-perl-0.6
dpkg-source: info: unpacking libpdl-io-hdf5-perl_0.6.orig.tar.gz
dpkg-source: info: applying libpdl-io-hdf5-perl_0.6-1.1.diff.gz
I: Building the package
I: Running cd tmp/buildd/*/ && env
PATH="/usr/lib/ccache:/usr/sbin:/usr/bin:/sbin:/bin" dpkg-buildpackage -us -uc
-uc -us -i -rfakeroot
dpkg-buildpackage: source package libpdl-io-hdf5-perl
dpkg-buildpackage: source version 0.6-1.1
dpkg-buildpackage: source changed by Dominic Hargreaves <d...@earth.li>
dpkg-source -i --before-build libpdl-io-hdf5-perl-0.6
dpkg-buildpackage: host architecture i386
fakeroot debian/rules clean
make[1]: Entering directory `/tmp/buildd/libpdl-io-hdf5-perl-0.6'
dh clean
dh_testdir
dh_auto_clean
dh_clean
dpatch deapply-all
30-ccflags-5.14 not applied to ./ .
20-update-clean-target not applied to ./ .
10-remove-interpreter-from-package not applied to ./ .
rm -rf patch-stamp patch-stampT debian/patched
dh clean
dh_testdir
dh_auto_clean
dh_clean
make[1]: Leaving directory `/tmp/buildd/libpdl-io-hdf5-perl-0.6'
dpkg-source -i -b libpdl-io-hdf5-perl-0.6
dpkg-source: warning: no source format specified in debian/source/format, see
dpkg-source(1)
dpkg-source: info: using source format `1.0'
dpkg-source: info: building libpdl-io-hdf5-perl using existing
libpdl-io-hdf5-perl_0.6.orig.tar.gz
dpkg-source: info: building libpdl-io-hdf5-perl in
libpdl-io-hdf5-perl_0.6-1.1.diff.gz
dpkg-source: warning: executable mode 0755 of
'debian/patches/20-update-clean-target.dpatch' will not be represented in diff
dpkg-source: warning: executable mode 0755 of
'debian/patches/10-remove-interpreter-from-package.dpatch' will not be
represented in diff
dpkg-source: warning: executable mode 0755 of
'debian/patches/30-ccflags-5.14.dpatch' will not be represented in diff
dpkg-source: info: building libpdl-io-hdf5-perl in
libpdl-io-hdf5-perl_0.6-1.1.dsc
debian/rules build
make[1]: Entering directory `/tmp/buildd/libpdl-io-hdf5-perl-0.6'
test -d debian/patched || install -d debian/patched
dpatch apply-all
applying patch 10-remove-interpreter-from-package to ./ ... ok.
applying patch 20-update-clean-target to ./ ... ok.
applying patch 30-ccflags-5.14 to ./ ... ok.
dpatch cat-all >>patch-stampT
mv -f patch-stampT patch-stamp
dh build
dh_testdir
dh_auto_configure
Found libhdf5.so at /usr/lib/libhdf5.so
Found hdf5.h at /usr/include/hdf5.h
Defining bool=int (linux seems to need this)
'CREATE_PACKLIST' is not a known MakeMaker parameter name.
Writing Makefile for PDL::IO::HDF5
Writing MYMETA.yml
dh_auto_build
make[2]: Entering directory `/tmp/buildd/libpdl-io-hdf5-perl-0.6'
/usr/bin/perl -I/usr/lib/perl5 "-MPDL::PP qw/PDL::IO::HDF5 PDL::IO::HDF5 HDF5/"
hdf5.pd
cp HDF5.pm blib/lib/PDL/IO/HDF5.pm
cp HDF5/Dataset.pm blib/lib/PDL/IO/HDF5/Dataset.pm
cp HDF5/Group.pm blib/lib/PDL/IO/HDF5/Group.pm
cp HDF5/tkview.pm blib/lib/PDL/IO/HDF5/tkview.pm
/usr/bin/perl /usr/share/perl/5.14/ExtUtils/xsubpp -typemap
/usr/share/perl/5.14/ExtUtils/typemap -typemap
/usr/lib/perl5/PDL/Core/typemap.pdl -typemap typemap HDF5.xs > HDF5.xsc && mv
HDF5.xsc HDF5.c
cc -c -I/usr/lib/perl5/PDL/Core -I/usr/include -Dbool=int -g -D_REENTRANT
-D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe
-I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -g
-DVERSION=\"0.6\" -DXS_VERSION=\"0.6\" -fPIC "-I/usr/lib/perl/5.14/CORE"
HDF5.c
In file included from /usr/lib/perl/5.14/CORE/perl.h:2464:0,
from HDF5.xs:6:
/usr/lib/perl/5.14/CORE/handy.h:108:0: warning: "bool" redefined [enabled by
default]
<command-line>:0:0: note: this is the location of the previous definition
HDF5.xs: In function 'H5errorOff':
HDF5.xs:40:2: warning: passing argument 1 of 'H5Eset_auto2' makes integer from
pointer without a cast [enabled by default]
/usr/include/H5Epublic.h:174:9: note: expected 'hid_t' but argument is of type
'void *'
HDF5.xs:40:2: error: too few arguments to function 'H5Eset_auto2'
/usr/include/H5Epublic.h:174:9: note: declared here
HDF5.xs: In function 'H5errorOn':
HDF5.xs:46:2: warning: passing argument 1 of 'H5Eset_auto2' makes integer from
pointer without a cast [enabled by default]
/usr/include/H5Epublic.h:174:9: note: expected 'hid_t' but argument is of type
'herr_t (*)(void *)'
HDF5.xs:46:2: warning: passing argument 2 of 'H5Eset_auto2' from incompatible
pointer type [enabled by default]
/usr/include/H5Epublic.h:174:9: note: expected 'H5E_auto2_t' but argument is of
type 'struct _IO_FILE *'
HDF5.xs:46:2: error: too few arguments to function 'H5Eset_auto2'
/usr/include/H5Epublic.h:174:9: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Dcreate':
HDF5.xs:1239:2: error: too few arguments to function 'H5Dcreate2'
/usr/include/H5Dpublic.h:104:8: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Dopen':
HDF5.xs:1255:2: error: too few arguments to function 'H5Dopen2'
/usr/include/H5Dpublic.h:108:8: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Gcreate':
HDF5.xs:1358:2: error: too few arguments to function 'H5Gcreate2'
/usr/include/H5Gpublic.h:75:8: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Gopen':
HDF5.xs:1374:2: error: too few arguments to function 'H5Gopen2'
/usr/include/H5Gpublic.h:78:8: note: declared here
HDF5.xs: In function 'XS_PDL__IO__HDF5_H5Acreate':
HDF5.xs:1470:2: error: too few arguments to function 'H5Acreate2'
/usr/include/H5Apublic.h:44:8: note: declared here
make[2]: *** [HDF5.o] Error 1
make[2]: Leaving directory `/tmp/buildd/libpdl-io-hdf5-perl-0.6'
dh_auto_build: make -j1 returned exit code 2
make[1]: *** [build] Error 2
make[1]: Leaving directory `/tmp/buildd/libpdl-io-hdf5-perl-0.6'
dpkg-buildpackage: error: debian/rules build gave error exit status 2
E: Failed autobuilding of package
I: unmounting /var/cache/pbuilder/ccache filesystem
I: unmounting dev/pts filesystem
I: unmounting proc filesystem
I: cleaning the build env
I: removing directory /var/cache/pbuilder/build//10221 and its subdirectories
gbp:error: Couldn't run '/usr/local/bin/git-pbuilder -i':
/usr/local/bin/git-pbuilder returned 1
