Hi, I just tried to build again picard-tools in a clean chroot with pbuilder and picard-tools successfully build with no modifications in libsnappy.
I think your problem is with the picard-tools package not getting the jar file. You should check the path you use to find libsnappy jar file. make[1]: Entering directory `/tmp/buildd/picard-tools-1.82' dh_auto_build -- -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 Buildfile: /tmp/buildd/picard-tools-1.82/build.xml [exec] Execute failed: java.io.IOException: Cannot run program "svnversion": java.io.IOException: error=2, No such file or directory init: compile-sam-jdk: [mkdir] Created dir: /tmp/buildd/picard-tools-1.82/classes [javac] /tmp/buildd/picard-tools-1.82/build.xml:101: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 112 source files to /tmp/buildd/picard-tools-1.82/classes [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. sam-jar: [mkdir] Created dir: /tmp/buildd/picard-tools-1.82/dist [jar] Building jar: /tmp/buildd/picard-tools-1.82/dist/sam-1.82.jar compile-picard: [javac] /tmp/buildd/picard-tools-1.82/build.xml:113: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 218 source files to /tmp/buildd/picard-tools-1.82/classes [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. compile-src: Olivier -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438