This is due to a change in the CMake build system. The fix is to remove the offending line in CMakeLists.txt,
"INCLUDE (${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeSystem.cmake)"
with no replacement. Torsten On 06/22/2013 06:09 AM, Lucas Nussbaum wrote:
Source: cmtk Version: 2.2.2-2 Severity: serious Tags: jessie sid User: [email protected] Usertags: qa-ftbfs-20130620 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part:make[1]: Entering directory `/«PKGBUILDDIR»' dh_auto_configure -- \ -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \ -DBUILD_APPS:BOOL=ON \ -DBUILD_DOCUMENTATION:BOOL=OFF \ -DBUILD_GUI:BOOL=ON \ -DBUILD_SHARED_LIBS:BOOL=ON \ -DBUILD_TESTING:BOOL=OFF \ -DCMTK_BUILD_DCMTK:BOOL=OFF \ -DCMTK_BUILD_MXML:BOOL=OFF \ -DCMTK_BUILD_NRRD:BOOL=ON \ -DCMTK_BUILD_SQLITE:BOOL=OFF \ -DCMTK_BUILD_ZLIB:BOOL=OFF \ -DCMTK_ROOT_PATH_SRI24:PATH=/usr/share/data/sri24-atlas \ -DCMTK_USE_DCMTK:BOOL=ON \ -DCMTK_USE_FFTW:BOOL=ON \ -DCMTK_USE_QT:BOOL=ON \ -DCMTK_USE_SMP:BOOL=ON \ -DCMTK_USE_SQLITE:BOOL=ON \ -DDART_TESTING_TIMEOUT:STRING=15000 \ -DMXML_INCLUDE_DIR:PATH=/usr/include \ -DLZMA_INCLUDE_DIRS:PATH=/usr/include/lzma \ -DCMAKE_SKIP_RPATH:BOOL=OFF \ -DCMTK_BUILD_WRAPPER:BOOL=ON \ mkdir -p obj-x86_64-linux-gnu cd obj-x86_64-linux-gnu cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DBUILD_APPS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=OFF -DBUILD_GUI:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=OFF -DCMTK_BUILD_DCMTK:BOOL=OFF -DCMTK_BUILD_MXML:BOOL=OFF -DCMTK_BUILD_NRRD:BOOL=ON -DCMTK_BUILD_SQLITE:BOOL=OFF -DCMTK_BUILD_ZLIB:BOOL=OFF -DCMTK_ROOT_PATH_SRI24:PATH=/usr/share/data/sri24-atlas -DCMTK_USE_DCMTK:BOOL=ON -DCMTK_USE_FFTW:BOOL=ON -DCMTK_USE_QT:BOOL=ON -DCMTK_USE_SMP:BOOL=ON -DCMTK_USE_SQLITE:BOOL=ON -DDART_TESTING_TIMEOUT:STRING=15000 -DMXML_INCLUDE_DIR:PATH=/usr/include -DLZMA_INCLUDE_DIRS:PATH=/usr/include/lzma -DCMAKE_SKIP_RPATH:BOOL=OFF -DCMTK_BUILD_WRAPPER:BOOL=ON -- The C compiler identification is GNU 4.8.1 -- The CXX compiler identification is GNU 4.8.1 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done CMake Error at CMakeLists.txt:53 (INCLUDE): include could not find load file: /«PKGBUILDDIR»/obj-x86_64-linux-gnu/CMakeFiles/CMakeSystem.cmake -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of int -- Check size of int - done -- Check size of long -- Check size of long - done -- Check size of void* -- Check size of void* - done -- Check size of char -- Check size of char - done -- Check size of short -- Check size of short - done -- Check size of float -- Check size of float - done -- Check size of double -- Check size of double - done -- Looking for limits.h -- Looking for limits.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for include files sys/types.h, sys/prctl.h -- Looking for include files sys/types.h, sys/prctl.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for C++ include iostream -- Looking for C++ include iostream - found -- Check for STD namespace -- Check for STD namespace - found -- Check for ANSI scope -- Check for ANSI scope - found -- Check for sstream -- Check for sstream - found -- System is Linux-2.6.32-5-xen-amd64 -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file execinfo.h -- Looking for include file execinfo.h - found -- Looking for include file fcntl.h -- Looking for include file fcntl.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - not found -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Looking for include file termios.h -- Looking for include file termios.h - found -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file values.h -- Looking for include file values.h - found -- Looking for include file sys/ioctl.h -- Looking for include file sys/ioctl.h - found -- Looking for include file sys/procfs.h -- Looking for include file sys/procfs.h - found -- Looking for include file sys/stat.h -- Looking for include file sys/stat.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file sys/times.h -- Looking for include file sys/times.h - found -- Looking for include file sys/utsname.h -- Looking for include file sys/utsname.h - found -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Check the value of the 22nd bit of a 32-bit quiet-NaN -- Check the value of the 22nd bit of a 32-bit quiet-NaN - 1 -- Looking for C++ include unordered_map -- Looking for C++ include unordered_map - not found -- Looking for C++ include hash_map -- Looking for C++ include hash_map - found -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Looking for include file dispatch/dispatch.h -- Looking for include file dispatch/dispatch.h - not found -- Performing Test CMTK_COMPILER_VAR_AUTO_ARRAYSIZE -- Performing Test CMTK_COMPILER_VAR_AUTO_ARRAYSIZE - Success -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.8") -- Using system zlib -- Using system mxml -- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6") -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so -- Looking for BZ2_bzCompressInit in /usr/lib/x86_64-linux-gnu/libbz2.so - found -- Found system libbz2 -- Could NOT find LZMA (missing: LZMA_LIBRARIES LZMA_INCLUDE_DIRS) -- Found DCMTK: /usr/include/dcmtk/config -- - tested library png -- - tested library tiff -- - tested library CharLS -- Using system DCMTK library. -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Found SQLite3: /usr/lib/x86_64-linux-gnu/libsqlite3.so -- Using system sqlite3 library -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake (found suitable version "4.8.4", minimum required is "4.3.0") Qt4 Found OK () -- Configuring incomplete, errors occurred! dh_auto_configure: cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON -DBUILD_APPS:BOOL=ON -DBUILD_DOCUMENTATION:BOOL=OFF -DBUILD_GUI:BOOL=ON -DBUILD_SHARED_LIBS:BOOL=ON -DBUILD_TESTING:BOOL=OFF -DCMTK_BUILD_DCMTK:BOOL=OFF -DCMTK_BUILD_MXML:BOOL=OFF -DCMTK_BUILD_NRRD:BOOL=ON -DCMTK_BUILD_SQLITE:BOOL=OFF -DCMTK_BUILD_ZLIB:BOOL=OFF -DCMTK_ROOT_PATH_SRI24:PATH=/usr/share/data/sri24-atlas -DCMTK_USE_DCMTK:BOOL=ON -DCMTK_USE_FFTW:BOOL=ON -DCMTK_USE_QT:BOOL=ON -DCMTK_USE_SMP:BOOL=ON -DCMTK_USE_SQLITE:BOOL=ON -DDART_TESTING_TIMEOUT:STRING=15000 -DMXML_INCLUDE_DIR:PATH=/usr/include -DLZMA_INCLUDE_DIRS:PATH=/usr/include/lzma -DCMAKE_SKIP_RPATH:BOOL=OFF -DCMTK_BUILD_WRAPPER:BOOL=ON returned exit code 1 make[1]: *** [override_dh_auto_configure] Error 2The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2013/06/20/cmtk_2.2.2-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
-- Torsten Rohlfing, PhD SRI International, Neuroscience Program Program Director 333 Ravenswood Ave, Menlo Park, CA 94025 Phone: ++1 (650) 859-3379 Fax: ++1 (650) 859-2743 [email protected] http://www.stanford.edu/~rohlfing/ "Though this be madness, yet there is a method in't" -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected]
