>> Should I reinstall MySQL to test this, or is there a more simple way?
> You could try a "apt-get --reinstall install mysql-server-4.1" if you don't
> mind a minute of mysql downtime. Would be great!

It looks like it's still a problem:

# apt-get --reinstall install mysql-server-4.1
Reading Package Lists... Done
Building Dependency Tree... Done
0 upgraded, 0 newly installed, 1 reinstalled, 0 to remove and 1 not
upgraded.
Need to get 0B/14.6MB of archives.
After unpacking 0B of additional disk space will be used.
Do you want to continue? [Y/n]
Reading package fields... Done
Reading package status... Done
Retrieving bug reports... Done
Preconfiguring packages ...
(Reading database ... 37649 files and directories currently installed.)
Preparing to replace mysql-server-4.1 4.1.11a-4sarge2 (using
.../mysql-server-4.1_4.1.11a-4sarge2_i386.deb) ...
Stopping MySQL database server: mysqld.
Stopping MySQL database server: mysqld.
Unpacking replacement mysql-server-4.1 ...
Setting up mysql-server-4.1 (4.1.11a-4sarge2) ...
Stopping MySQL database server: mysqld.
Starting MySQL database server: mysqld.
Checking for crashed MySQL tables in the background.

# ls -l /var/lib/mysql/ | grep root
-rw-rw----  1 root  root           4 Nov 30 21:07 debpro-relay-bin.000298
-rw-rw----  1 root  root           4 Nov 30 21:07 debpro-relay-bin.000299



I fixed it with:
# chown mysql:mysql /var/lib/mysql/*

/Jacob


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