Control: tag -1 + confirmed patch On Sun, 09 Nov 2014 08:07:04 +0100, Lucas Nussbaum wrote:
> Source: biojava3-live > Version: 3.1.0+dfsg-1 > Severity: serious > Tags: jessie sid > User: debian...@lists.debian.org > Usertags: qa-ftbfs-20141108 qa-ftbfs > Justification: FTBFS in jessie on amd64 > > javadocs: > > [javadoc] > > /«BUILDDIR»/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: > > error: unmappable character for encoding ASCII > > [javadoc] * @author Kalle N???slund (docs) > > [javadoc] ^ > > [javadoc] > > /«BUILDDIR»/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: > > error: unmappable character for encoding ASCII > > [javadoc] * @author Kalle N???slund (docs) > > [javadoc] ^ > > [javadoc] > > /«BUILDDIR»/biojava3-live-3.1.0+dfsg/biojavadoc/src/main/java/org/biojava3/ontology/utils/Annotatable.java:77: > > error: unmappable character for encoding ASCII > > [javadoc] * @author Kalle N???slund (docs) > > [javadoc] ^ The package doesn't build in my sid chroot (because of some rdep glitch [0]) but I've tested the attached patch in a jessie chroot. (There are other ways to tell javadoc about the file encodings but that was my first try and it works.) Cheers, gregor [0] Errors were encountered while processing: icedtea-netx:amd64 E: Sub-process /usr/bin/dpkg returned an error code (1) Failed to perform requested operation on package. Trying to recover: Setting up icedtea-netx:amd64 (1.5.1-1) ... update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link update-alternatives: warning: forcing reinstallation of alternative /usr/lib/jvm/java-7-openjdk-amd64/jre/bin/itweb-settings because link group itweb-settings is broken update-alternatives: warning: not replacing /usr/share/man/man1/itweb-settings.1.gz with a link update-alternatives: error: alternative path /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/javaws doesn't exist dpkg: error processing package icedtea-netx:amd64 (--configure): subprocess installed post-installation script returned error exit status 2 Errors were encountered while processing: icedtea-netx:amd64 -- .''`. Homepage: http://info.comodo.priv.at/ - OpenPGP key 0xBB3A68018649AA06 : :' : Debian GNU/Linux user, admin, and developer - http://www.debian.org/ `. `' Member of VIBE!AT & SPI, fellow of the Free Software Foundation Europe `- NP: The Beatles: Good Morning Good Morning
Index: debian/build.xml
===================================================================
--- debian/build.xml (revision 18487)
+++ debian/build.xml (working copy)
@@ -61,7 +61,7 @@
<target name="javadocs">
<mkdir dir="${docs.dir}"/>
<mkdir dir="${docs.lib.dir}"/>
- <javadoc destdir="${docs.lib.dir}" sourcepath="${src.dir}" packagenames="org.*">
+ <javadoc destdir="${docs.lib.dir}" sourcepath="${src.dir}" packagenames="org.*" encoding="UTF-8">
<link href="http://java.sun.com/j2se/1.6.0/docs/api/"/>
</javadoc>
</target>
Index: debian/changelog
===================================================================
--- debian/changelog (revision 18487)
+++ debian/changelog (working copy)
@@ -1,3 +1,14 @@
+biojava3-live (3.1.0+dfsg-1.1) UNRELEASED; urgency=medium
+
+ * Non-maintainer upload.
+ * Fix "FTBFS in jessie: dh_install: libbiojava3-java-doc missing files
+ (doc/biojava/*), aborting":
+ debian/build.xml: tell javadoc that source files are encoded as UTF-8;
+ otherwise it bails out, and dh_install finds nothing to install.
+ (Closes: #768710)
+
+ -- gregor herrmann <gre...@debian.org> Mon, 17 Nov 2014 20:36:16 +0100
+
biojava3-live (3.1.0+dfsg-1) unstable; urgency=medium
* New upstream release
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