I just noticed that if I start baobab with sudo, I can see those partitions which are mounted in /media or have mountoption user in fstab.

Further investigation showed up that this even works if I start baobab with sudo -u <user> where <user> is the same as logged in, so it is obvious that it has to do something with the environment:

If I unset DBUS_SESSION_BUS_ADDRESS before starting baobab it works with all partitions with option 'user' or 'users' in fstab (not works if they are mounted with 'default')

Hope that helps.
Regards
Michael


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