> On Wed, Nov 26, 2014 at 3:49 AM, Charles Plessy <ple...@debian.org> wrote:
>
> > in recent versions of samtools, the mpileup command has a new option to
> > specify the coverage at run time.
> >
> > Would it be fine to drop our patch that was raising the default coverage
> > cap from 8,000 to 1,000,000 ? If yes, do you think we need to mention it
> > as a NEWS entry ?
Le Wed, Nov 26, 2014 at 02:27:22PM -0500, Dominique Belhachemi a écrit :
>
> I think we still need the patch. samtools depth doesn't support the -d flag.
Hi Dominique,
in my latest upload, I delete the patches by mistake. But on the other hand,
I see that you solved the issue upstream in the meantime.
https://github.com/samtools/samtools/pull/375
Unless we need a new upload before version 1.3, shall we just wait ?
Have a nice day,
--
Charles
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