According to upstream's changelog, this is fixed in 1.03:

1.03 (5 January 2005)
 - Add ndiswrapper to blacklist.
 - Fix blacklisted modules without versions bug. (Peter Cech)
 - Fix random services-stopping-twice bug.
 - Add --bug-report option.
 - Support unloading particular versions of modules.
 - Use the hwclock.sh init script on Debian.
 - Restart services in reverse order to stopping them.

Koen


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