Package: src:bedtools
Version: 2.25.0-1
User: sanv...@debian.org
Usertags: binary-indep
Severity: important
Dear maintainer:
I tried to build this package with "dpkg-buildpackage -A"
(i.e. only architecture-independent packages), and it failed:
--------------------------------------------------------------------------------
[...]
fakeroot debian/rules binary-indep
dh binary-indep
dh_testroot -i
dh_prep -i
rm -f debian/bedtools-test.substvars
rm -f debian/bedtools-test.*.debhelper
rm -rf debian/bedtools-test/
dh_auto_install -i
install -d debian/bedtools-test
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp
AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Building BEDTools:
=========================================================
DETECTED_VERSION = v2.25.0
CURRENT_VERSION = v2.25.0
* Creating BamTools API
- Building in src/utils/bedFile
make[2]: '../../../obj//bedFile.o' is up to date.
- Building in src/utils/BinTree
make[2]: '../../../obj//BinTree.o' is up to date.
- Building in src/utils/version
make[2]: Nothing to be done for 'all'.
[... snipped ...]
find debian/bedtools-test/usr/include -type f -print0 2>/dev/null |
xargs -0r chmod 0644
find debian/bedtools-test/usr/share/applications -type f -print0
2>/dev/null | xargs -0r chmod 0644
find debian/bedtools-test/usr/lib/x86_64-linux-gnu/perl5/5.20
debian/bedtools-test/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0
2>/dev/null | xargs -0r chmod a-X
find debian/bedtools-test -perm -5 -type f \( -name '*.so.*' -o -name
'*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name
'*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs'
\) -print0 2>/dev/null | xargs -0r chmod 0644
find debian/bedtools-test/usr/lib -type f -name '*.ali' -print0
2>/dev/null | xargs -0r chmod uga-w
chmod -x /<<PKGBUILDDIR>>/debian/bedtools/usr/share/bedtools/genomes/*.genome
chmod: cannot access
'/<<PKGBUILDDIR>>/debian/bedtools/usr/share/bedtools/genomes/*.genome': No such
file or directory
debian/rules:29: recipe for target 'override_dh_fixperms' failed
make[1]: *** [override_dh_fixperms] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules:11: recipe for target 'binary-indep' failed
make: *** [binary-indep] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary-indep gave error exit
status 2
--------------------------------------------------------------------------------
Sorry not to have a fix, as I am reporting many bugs similar to
this one, but I can give some general hints:
* If all the arch-independent packages are dummy transitional packages
released with jessie, the easy fix is to drop them now.
* If not, debian/rules should be modified so that the binary-indep
target works in all cases, even when binary-arch is not used (this is
what the "Architecture: all" autobuilder does). For that:
* If you are using debhelper, you might want to use options -a and -i
for dh_* commands so that they do not act on packages they do not
have to act.
* Also, if you are using dh, the (independently) optional targets
override_dh_foo-arch and override_dh_foo-indep (for several values
of "foo") may be useful to write a debian/rules which behaves exactly
as desired.
After checking that both "dpkg-buildpackage -A" and "dpkg-buildpackage -B"
work properly, this package will be suitable to be uploaded in
source-only form if you wish (you might want to try it).
Thanks.
