Hi Andrew, I just uploaded the new version to Debian unstable. Please note that you somehow missed to add -lsubunit to src/Makefile.am. I adapted the Debian patch for the new version:
https://anonscm.debian.org/cgit/debian-med/gubbins.git/tree/debian/patches/add_missing_lib_for_check.patch Thanks for your support Andreas. On Wed, Dec 09, 2015 at 03:57:41PM +0000, Andrew Page wrote: > Hi, > I have pushed a fix for the build error on i386 as version 1.4.4 > Details are here: > https://github.com/sanger-pathogens/gubbins/pull/158 > <https://github.com/sanger-pathogens/gubbins/pull/158> > > I replicated the bug on i386 and fixed it. The tests also pass on amd64 & OSX > 10.10 > > Regards, > Andrew > > > > On 6 Dec 2015, at 06:40, Andreas Tille <andr...@an3as.eu> wrote: > > > > Hi Andrew, > > > > I hereby forward a build issue on i386 architecture. > > > > Kind regards > > > > Andreas. > > > > On Sat, Dec 05, 2015 at 10:30:32PM -0500, Aaron M. Ucko wrote: > >> Source: gubbins > >> Version: 1.4.3-1 > >> Severity: important > >> Justification: fails to build from source > >> > >> The i386 build of gubbins failed: > >> > >> FAIL: run_all_tests > >> > >> ============================================================================ > >> Testsuite summary for gubbins 1.4.3 > >> > >> ============================================================================ > >> # TOTAL: 1 > >> # PASS: 0 > >> # SKIP: 0 > >> # XFAIL: 0 > >> # FAIL: 1 > >> # XPASS: 0 > >> # ERROR: 0 > >> > >> ============================================================================ > >> See src/test-suite.log > >> > >> I was able to reproduce the error in an i386 chroot, yielding the following > >> details: > >> > >> FAIL: run_all_tests > >> =================== > >> > >> Running suite(s): Creating_SNP_Sites > >> Parsing a phylip file > >> Parsing a vcf file > >> checking branch sequences > >> Checking the gubbins functionality > >> snp_searching > >> 94%: Checks: 39, Failures: 2, Errors: 0 > >> > >> ../tests/check_snp_sites.c:73:F:snp_sites:valid_alignment_with_multiple_lines_per_sequence:0: > >> Invalid ALN file for multiple lines per seq > >> ../tests/check_snp_sites.c:85:F:snp_sites:two_sequences:0: Invalid ALN > >> file for multiple lines per seq > >> FAIL run_all_tests (exit status: 1) > >> > >> Could you please take a look? > >> > >> Thanks! > >> > >> _______________________________________________ > >> Debian-med-packaging mailing list > >> debian-med-packag...@lists.alioth.debian.org > >> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > >> > > > > -- > > http://fam-tille.de > > > > > -- > The Wellcome Trust Sanger Institute is operated by Genome Research > Limited, a charity registered in England with number 1021457 and a > company registered in England with number 2742969, whose registered > office is 215 Euston Road, London, NW1 2BE. > > -- http://fam-tille.de