Hi Ari, to make sure your question will not remain unanswered: I have no idea about Ubuntu but if I were you I would try to simply install the packages you found on your currently used system. Alternatively you could try to create a chroot environment.
Hope this helps Andreas. On Wed, Jan 20, 2016 at 03:10:09PM +0200, Ari Löytynoja wrote: > Hi, > > I'm using gcc 5.2.1 on Ubuntu 15.10. Is it possible to check the > compatibility > with this version of gcc? If not, is there gcc-6 available for Wily? I only > found a repository with gcc-6 for the next Ubuntu release: > https://launchpad.net/~ubuntu-toolchain-r/+archive/ubuntu/test/ > > Regards, Ari > > On Wednesday 20 January 2016 11:42:00 Andreas Tille wrote: > > Hi Ari, > > > > yes, that source tarball from > > http://wasabiapp.org/download/prank/prank.source.150803.tgz > > is used for the packaging. > > > > Thanks a lot for your quick reply > > > > Andreas. > > > > On Wed, Jan 20, 2016 at 12:32:01PM +0200, Ari Löytynoja wrote: > > > Hi, > > > Which version of PRANK is that? The latest one is here > > > http://wasabiapp.org/download/prank/prank.source.150803.tgz > > > > > > Regards, Ari > > > > > > On Wednesday 20 January 2016 11:04:46 Andreas Tille wrote: > > > > Hi, > > > > > > > > the Debian package for prank failed to build when using gcc version 6 as > > > > you can read below in the bug report. Feel free to contact us via the > > > > bug e-mail address (see To of this mail). > > > > > > > > Kind regards > > > > > > > > Andreas. > > > > > > > > On Tue, Jan 19, 2016 at 06:22:00PM -0800, Martin Michlmayr wrote: > > > > > Package: prank > > > > > Version: 0.0.150803-1 > > > > > Severity: important > > > > > User: debian-...@lists.debian.org > > > > > Usertags: ftbfs-gcc-6 gcc-6-no-match > > > > > > > > > > This package fails to build with GCC 6. GCC 6 has not been released > > > > > yet, but it's expected that GCC 6 will become the default compiler for > > > > > stretch. > > > > > > > > > > Note that only the first error is reported; there might be more. You > > > > > can find a snapshot of GCC 6 in experimental. To build with GCC 6, > > > > > you can set CC=gcc-6 CXX=g++-6 explicitly. > > > > > > > > > > You may be able to find out more about this issue at > > > > > https://gcc.gnu.org/gcc-6/changes.html > > > > > > > > > > > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux > > > > > > > > > > ... > > > > > > > > > > > g++ -c -g -O2 -fstack-protector-strong -Wformat > > > > > > -Werror=format-security > > > > > > -pipe -O3 -I. -I/usr/include -o bppancestors.o bppancestors.cpp > > > > > > hmmodel.cpp: In member function 'void > > > > > > HMModel::alignmentModel(AncestralNode*)': hmmodel.cpp:1513:57: > > > > > > error: > > > > > > no match for 'operator<<' (operand types are > > > > > > 'std::basic_ostream<char>' > > > > > > and 'std::ostream {aka std::basic_ostream<char>}')> > > > > > > > > > > > > > cout<<"HMModel::alignmentModel: impossible 'as'"<<cout; > > > > > > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ > > > > > > > > > > > > hmmodel.cpp:1513:57: note: candidate: operator<<(int, int) > > > > > > <built-in> > > > > > > hmmodel.cpp:1513:57: note: no known conversion for argument 2 from > > > > > > 'std::ostream {aka std::basic_ostream<char>}' to 'int' In file > > > > > > included > > > > > > from /usr/include/c++/6/istream:39:0, > > > > > > > > > > > > from /usr/include/c++/6/fstream:38, > > > > > > > > > > > > from hmmodel.cpp:24: > > > > > > /usr/include/c++/6/ostream:108:7: note: candidate: > > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type& > > > > > > std::basic_ostream<_CharT, > > > > > > _Traits>::operator<<(std::basic_ostream<_CharT, > > > > > > _Traits>::__ostream_type& (*)(std::basic_ostream<_CharT, > > > > > > _Traits>::__ostream_type&)) [with _CharT = char; _Traits = > > > > > > std::char_traits<char>; std::basic_ostream<_CharT, > > > > > > _Traits>::__ostream_type = std::basic_ostream<char>]> > > > > > > > > > > > > > operator<<(__ostream_type& (*__pf)(__ostream_type&)) > > > > > > ^~~~~~~~ > > > > > > > > > > > > /usr/include/c++/6/ostream:108:7: note: no known conversion for > > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to > > > > > > 'std::basic_ostream<char>::__ostream_type& > > > > > > (*)(std::basic_ostream<char>::__ostream_type&) {aka > > > > > > std::basic_ostream<char>& (*)(std::basic_ostream<char>&)}' > > > > > > /usr/include/c++/6/ostream:117:7: note: candidate: > > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type& > > > > > > std::basic_ostream<_CharT, > > > > > > _Traits>::operator<<(std::basic_ostream<_CharT, > > > > > > _Traits>::__ios_type& > > > > > > (*)(std::basic_ostream<_CharT, _Traits>::__ios_type&)) [with _CharT > > > > > > = > > > > > > char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, > > > > > > _Traits>::__ostream_type = std::basic_ostream<char>; > > > > > > std::basic_ostream<_CharT, _Traits>::__ios_type = > > > > > > std::basic_ios<char>]> > > > > > > > > > > > > operator<<(__ios_type& (*__pf)(__ios_type&)) > > > > > > ^~~~~~~~ > > > > > > > > > > > > /usr/include/c++/6/ostream:117:7: note: no known conversion for > > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to > > > > > > 'std::basic_ostream<char>::__ios_type& > > > > > > (*)(std::basic_ostream<char>::__ios_type&) {aka > > > > > > std::basic_ios<char>& > > > > > > (*)(std::basic_ios<char>&)}' /usr/include/c++/6/ostream:127:7: note: > > > > > > candidate: std::basic_ostream<_CharT, _Traits>::__ostream_type& > > > > > > std::basic_ostream<_CharT, _Traits>::operator<<(std::ios_base& > > > > > > (*)(std::ios_base&)) [with _CharT = char; _Traits = > > > > > > std::char_traits<char>; std::basic_ostream<_CharT, > > > > > > _Traits>::__ostream_type = std::basic_ostream<char>]> > > > > > > > > > > > > > operator<<(ios_base& (*__pf) (ios_base&)) > > > > > > ^~~~~~~~ > > > > > > > > > > > > /usr/include/c++/6/ostream:127:7: note: no known conversion for > > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to > > > > > > 'std::ios_base& (*)(std::ios_base&)' > > > > > > /usr/include/c++/6/ostream:166:7: > > > > > > note: candidate: std::basic_ostream<_CharT, > > > > > > _Traits>::__ostream_type& > > > > > > std::basic_ostream<_CharT, _Traits>::operator<<(long int) [with > > > > > > _CharT > > > > > > = char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, > > > > > > _Traits>::__ostream_type = std::basic_ostream<char>]> > > > > > > > > > > > > > operator<<(long __n) > > > > > > ^~~~~~~~ > > > > > > > > > > > > /usr/include/c++/6/ostream:166:7: note: no known conversion for > > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to > > > > > > 'long > > > > > > int' /usr/include/c++/6/ostream:170:7: note: candidate: > > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type& > > > > > > std::basic_ostream<_CharT, _Traits>::operator<<(long unsigned int) > > > > > > [with _CharT = char; _Traits = std::char_traits<char>; > > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type = > > > > > > std::basic_ostream<char>]> > > > > > > > > > > > > > operator<<(unsigned long __n) > > > > > > ^~~~~~~~ > > > > > > > > > > > > /usr/include/c++/6/ostream:170:7: note: no known conversion for > > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to > > > > > > 'long > > > > > > unsigned int' /usr/include/c++/6/ostream:174:7: note: candidate: > > > > > > std::basic_ostream<_CharT, _Traits>::__ostream_type& > > > > > > std::basic_ostream<_CharT, _Traits>::operator<<(bool) [with _CharT = > > > > > > char; _Traits = std::char_traits<char>; std::basic_ostream<_CharT, > > > > > > _Traits>::__ostream_type = std::basic_ostream<char>]> > > > > > > > > > > > > > operator<<(bool __n) > > > > > > ^~~~~~~~ > > > > > > > > > > > > /usr/include/c++/6/ostream:174:7: note: no known conversion for > > > > > > argument 1 from 'std::ostream {aka std::basic_ostream<char>}' to > > > > > > 'bool' > > > > > > In file included from /usr/include/c++/6/ostream:638:0, > > > > > > > > > > > > from /usr/include/c++/6/istream:39, > > > > > > from /usr/include/c++/6/fstream:38, > > > > > > > > > > > from hmmodel.cpp:24: > > > > > _______________________________________________ > > > > > Debian-med-packaging mailing list > > > > > debian-med-packag...@lists.alioth.debian.org > > > > > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-pac > > > > > kagi > > > > > ng > > -- > Ari Löytynoja > Institute of Biotechnology > University of Helsinki, Finland > http://loytynojalab.biocenter.helsinki.fi > > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > -- http://fam-tille.de