Hi to all,
at what time intervals syncing takes place? I just tried pregap for the
fix of the missing links and it did not yet work.
I tested uncommenting the line in the tcl-script of the contig editor
with a version downloaded from sourceforge and installed with stow and
the fix worked (I use xfce4).
Best wishes,
Kerstin
On Mon, 22 Feb 2016, Andreas Tille wrote:
Hi James,
thanks a lot for the quick help.
On Mon, Feb 22, 2016 at 09:56:12AM +0000, James Bonfield wrote:
Please try commenting out (#) the "wm resizable $w 1 0" line of the
contig_editor procedure (approx line 111) in
/usr/share/staden/tcl/gap/contig_editor.tcl.
I've applied the suggested patch (which can be found in the packaging
repository[1]).
(It may not be /usr/share - Andreas, where does Debian by default
install Gap4?)
The patch will be applied to the source and later installed in the
location you named above.
This disables the attempt to inform the window manager that the X
dimension is under user control and Y dimension under the program
control.
I don't know if this is sufficient as testing this requires checking
every window manager out there and see which options they honour, but
it cures the problem for me with xfwm4.
Since I also can't really test we simply rely on Kerstin to check
whether it solves her problem. Kerstin, you might like to wait for the
next mirror sync until staden 2.0.0+b10-3 will be available. Please
confirm whether both problems you reported are solved. Thanks for
testing.
James, if you are interested there are some more patches[2] in the
packaging reporitory. Some of them might be of interest - at least
the spelling.patch with some spelling fixes.
Thanks again for your prompt help
Andreas.
[1]
https://anonscm.debian.org/viewvc/debian-med/trunk/packages/staden/trunk/debian/patches/cope_with_modern_windowmanager.patch?revision=21446&view=markup
[2]
https://anonscm.debian.org/viewvc/debian-med/trunk/packages/staden/trunk/debian/patches/
--
PD Dr. Kerstin Hoef-Emden Zülpicher Str. 47b
Universität zu Köln 50674 Köln
Biozentrum Köln (Cologne Biocenter) Germany
Botanisches Institut
http://www.uni-koeln.de/~aeb25/
