Hi, On Tue, Nov 01, 2016 at 11:05:02AM +0000, Iain Lane wrote: > I noticed in Ubuntu, where we run autopkgtests as part of britney > migration, that vcftools fails now. You can see on ci.debian.net[0] > > > not ok 26 - Testing vcf-fix-ploidy .. cat fix-ploidy.vcf | perl -I../. > > -MVcf /usr/bin/vcf-fix-ploidy -s fix-ploidy.samples -p fix-ploidy.txt > > 2>/dev/null | vcf-query -f '%POS[\t%SAMPLE %GTR %PL]\n' > > # Failed test 'Testing vcf-fix-ploidy .. cat fix-ploidy.vcf | perl -I../. > > -MVcf /usr/bin/vcf-fix-ploidy -s fix-ploidy.samples -p fix-ploidy.txt > > 2>/dev/null | vcf-query -f '%POS[\t%SAMPLE %GTR %PL]\n'' > > # at ./test.t line 452. > > # Structures begin differing at: > > # $got->[0] = '61098 M1 0/1 0,9,72,5,6,7 M2 0/0 > > 0,15,140,5,6,7 F3 1 147,0,5 F4 0 0,131,5 M5 0/0 0,9,83,5,6,7 M6 > > 0/0 0,6,56,5,6,7 > > # ' > > # $expected->[0] = '61098 M1 0 0,9,72,5,6,7 M2 0 0,15,140,5,6,7 > > F3 1/1 147,0,5 F4 0/0 0,131,5 M5 0 0,9,83,5,6,7 M6 0 > > 0,6,56,5,6,7 > > # '
Since the bug is menitoning the Perl version bump I wonder whether the perl team would have an explanation / fix for the issue. Kind regards Andreas. > [0] > https://ci.debian.net/data/packages/unstable/amd64/v/vcftools/20161028_112724.autopkgtest.log.gz -- http://fam-tille.de