Package: src:rmpi
Version: 0.6-6-1
Severity: serious
Dear maintainer:
I tried to build this package in stretch with "dpkg-buildpackage -B"
but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use
source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
make[1]: Entering directory '/<<PKGBUILDDIR>>'
CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use
source format 3.0 (quilt) instead
make[1]: 'reverse-config' is up to date.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f
debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch
debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
[... snipped ...]
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library --clean \
"--no-test-load" . \
"--built-timestamp=\"Sat, 25 Jun 2016 07:43:11
-0500\"" \
; \
else \
R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library \
--clean "--no-test-load" . \
"--built-timestamp=\"Sat, 25 Jun 2016 07:43:11
-0500\"" \
; \
fi
* installing *source* package 'Rmpi' ...
** package 'Rmpi' successfully unpacked and MD5 sums checked
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking mpi.h usability... no
checking mpi.h presence... no
checking for mpi.h... no
configure: error: "Cannot find mpi.h header file"
ERROR: configuration failed for package 'Rmpi'
* removing '/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi'
/usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed
make: *** [R_any_arch] Error 1
dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit
status 2
--------------------------------------------------------------------------------
This is just how the build ends, not necessarily the relevant part.
I've put several build logs here:
https://people.debian.org/~sanvila/build-logs/rmpi/
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the page for this package.
The bug should be reproducible with sbuild on a single CPU virtual machine.
Thanks.
