Package: python-numpy
Version: 1:1.13.3-2
Severity: normal
I guess it is a rare usecase since I haven't spotted another bugreport, and we
have managed to miss it for a while I guess.
dh_python2 installs built .so extensions with a arch specific suffix, e.g.:
neurodebian@smaug ~/deb/builds/pymvpa2/2.6.3-1 % grep dh_python2.*so
pymvpa2_2.6.3-1_amd64.build
I: dh_python2 fs:322: renaming _svmc.so to _svmc.x86_64-linux-gnu.so
I: dh_python2 fs:322: renaming smlrc.so to smlrc.x86_64-linux-gnu.so
and in pymvpa2 we have been using numpy.ctypeslib.load_library to load
them afterwards, but apparently [1,2] it failed to load them for a while,
and that is due to following code in load_library:
so_ext3 = '.%s-%s.so' % (sysconfig.get_config_var('SOABI'),
sysconfig.get_config_var('MULTIARCH'))
which is correct for python3, but wouldn't work in python2 since SOABI is not
defined, so we end up looking for .None-x86_64-linux-gnu.so :
$> strace -f python -c 'from numpy.ctypeslib import load_library;
print(load_library("libXXX", "/"))' 2>&1 | grep libXXX
[pid 7542] stat("/libXXX.None-x86_64-linux-gnu.so", 0x7fffe43276b0) =
-1 ENOENT (No such file or directory)
[pid 7542] stat("/libXXX.so", 0x7fffe43276b0) = -1 ENOENT (No such
file or directory)
I am not sure about "correct" way to address it, but a quick workaround would be
in python2, do not prepend SOABI. Or alternatively, do not prepend if
sysconfig.get_config_var('SOABI') is not defined altogether
[1] https://github.com/PyMVPA/PyMVPA/issues/564
[2] https://github.com/PyMVPA/PyMVPA/issues/568
-- System Information:
Debian Release: buster/sid
APT prefers unstable
APT policy: (600, 'unstable'), (300, 'experimental'), (100,
'unstable-debug'), (100, 'stable')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 4.14.0-3-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8),
LANGUAGE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages python-numpy depends on:
ii libatlas3-base [liblapack.so.3] 3.10.3-5
ii libblas3 [libblas.so.3] 3.7.1-4
ii libc6 2.26-2
ii liblapack3 [liblapack.so.3] 3.7.1-4
ii libopenblas-base [liblapack.so.3] 0.2.20+ds-4
ii python 2.7.14-4
ii python2.7 2.7.14-4
python-numpy recommends no packages.
Versions of packages python-numpy suggests:
ii gcc 4:7.2.0-1d1
ii gfortran 4:7.2.0-1d1
ii python-dev 2.7.14-4
ii python-nose 1.3.7-3
ii python-numpy-dbg 1:1.13.3-2
pn python-numpy-doc <none>
-- no debconf information
