Hi Steve,
Thanks for taking the time to set up a patch! On 23 August 2018 at 14:57, Steve Langasek wrote: | Package: gsl | Version: 2.5+dfsg-4 | Severity: normal | Tags: patch | User: ubuntu-de...@lists.ubuntu.com | Usertags: origin-ubuntu cosmic ubuntu-patch | | Dear Dirk, | | In Ubuntu, I noticed that pscan-tfbs was failing to build due to unresolved | symbols in libgsl.so. I don't know if the specific build failure is | reproducible in Debian, but I can confirm that libgsl.so.23 is also | underlinked in Debian resulting in unresolved symbols, which is not supposed | to be the case for shared libraries: Any reason why? This particular scheme (of not assigning a major the auxiliary library libgslcblas) has been in place for a decade+. Could it be that my recent attempts of getting majors into package (where I was sloppy) caused this? | | $ ldd -d -r /usr/lib/x86_64-linux-gnu/libgsl.so.23 | linux-vdso.so.1 (0x00007ffd39dfc000) | libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007fde64546000) | libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007fde64389000) | /lib64/ld-linux-x86-64.so.2 (0x00007fde64b6c000) | undefined symbol: cblas_ctrmv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zswap (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zsymm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cgeru (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_sgemm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ctrsv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_sgemv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_srotg (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zgemm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cdotu_sub (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dznrm2 (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ddot (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_csymm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cher2k (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zdotu_sub (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_sdot (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_sdsdot (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cgerc (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_scnrm2 (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ctrmm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_sscal (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_strmm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zcopy (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dsyrk (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cherk (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zherk (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zher (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ztrmv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_drotmg (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dswap (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_scopy (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_scasum (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zscal (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_drotg (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zdotc_sub (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cscal (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_caxpy (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zsyr2k (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ssyr2k (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_csyr2k (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ztrsm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ctrsm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ssymm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cdotc_sub (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zher2k (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_saxpy (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_idamax (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_snrm2 (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dsdot (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cher (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dger (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cher2 (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dzasum (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dsyr2 (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ssyrk (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_strmv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dgemv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cgemm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dasum (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dsymv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_srotm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_sswap (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dtrmv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_isamax (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zhemv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zaxpy (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dcopy (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_sasum (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dsyr (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_strsm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_drot (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ztrsv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_izamax (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ssymv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_chemm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zgeru (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dtrsv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_sger (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_srot (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dsymm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ztrmm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zdscal (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zher2 (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ssyr (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dtrmm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zgerc (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_csscal (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dsyr2k (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_chemv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dnrm2 (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_drotm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_icamax (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zgemv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zhemm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cgemv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ssyr2 (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_strsv (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dscal (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dgemm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_srotmg (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_dtrsm (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_ccopy (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_zsyrk (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_cswap (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_daxpy (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | undefined symbol: cblas_csyrk (/usr/lib/x86_64-linux-gnu/libgsl.so.23) | $ | | Please consider applying the attached patch to the gsl package in Debian. I | have uploaded it to Ubuntu to fix the build failure of the reverse | dependency. | | Corresponding changelog entries for these changes: | | * debian/patches/gsl-cblas-linkage.patch: add missing linkage on | libgslcblas to libgsl.so. | * specify AUTOMAKE and ACLOCAL to dh_autoreconf, to work around upstream | hard-coding of automake-1.13. Sounds good to me. I think I'll build with this evening. Now it is time to confess that I am an utter noob when it comes to libtool, so I am not sure I fully grok what your patch does, besides "reintroducing" these two sibbling libraries to each other. Lastly, how strong do you feel about the patch? Should we talk to upstream about it? Cheers from Chicago, Dirk | | Thanks, | -- | Steve Langasek Give me a lever long enough and a Free OS | Debian Developer to set it on, and I can move the world. | Ubuntu Developer https://www.debian.org/ | slanga...@ubuntu.com vor...@debian.org | [DELETED ATTACHMENT gsl_2.5+dfsg-4ubuntu3.debdiff, plain text] -- http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
