Package: src:python-cobra Version: 0.13.4-2 Severity: important Tags: sid buster
Even after the dependency fix, the autopkg tests fail with: =========================== short test summary info ============================ SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:200: condition: not libsbml SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:206: condition: not libsbml SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:212: condition: not libsbml SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:218: condition: not libsbml SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:200: condition: not cPickle SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:206: condition: not cPickle SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:212: condition: not cPickle SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:218: condition: not cPickle SKIP [23] /usr/lib/python3/dist-packages/pytest_benchmark/plugin.py:389: Benchmarks are skipped (--benchmark-skip was used). SKIP [6] /usr/lib/python3/dist-packages/cobra/test/test_io.py:237: not implemented SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:233: condition: not libsbml SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:233: condition: not cPickle SKIP [2] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:241: condition: not libsbml SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_io.py:241: condition: not cPickle SKIP [9] ../../../usr/lib/python3/dist-packages/cobra/test/test_io_order.py:73: Order for legacy SBML I/O is uninteresting. SKIP [9] ../../../usr/lib/python3/dist-packages/cobra/test/test_io_order.py:73: Order for Matlab model I/O is uninteresting. SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:35: no cplex SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:51: no cplex SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:760: need cplex SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:787: no cplex SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:801: no cplex SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:814: no cplex SKIP [1] ../../../usr/lib/python3/dist-packages/cobra/test/test_solver_model.py:826: no cplex =============================== warnings summary =============================== cobra/test/test_medium.py::TestMinimalMedia::()::test_medium_alternative_mip cobra/medium/minimal_medium.py:217 [1;31mFutureWarning[0m: Sorting because non-concatenation axis is not aligned. A future version of pandas will change to not sort by default. To accept the future behavior, pass 'sort=False'. To retain the current behavior and silence the warning, pass 'sort=True'. -- Docs: http://doc.pytest.org/en/latest/warnings.html == 226 passed, 72 skipped, 5 xfailed, 1 xpassed, 1 warnings in 39.82 seconds === make: *** [import sys from cobra.test import test_all sys.exit(0) if test_all() else sys.exit(1):9: py3-test] Error 1 autopkgtest [13:37:26]: test command1: -----------------------] autopkgtest [13:37:26]: test command1: - - - - - - - - - - results - - - - - - - - - - command1 FAIL non-zero exit status 2