Package: wnpp Severity: wishlist Owner: Steffen Moeller <moel...@debian.org>
* Package name : presto Version : 0.5.2 * URL : https://pypi.org/project/presto/ * License : MIT Programming Lang: Python Description : high-throughput lymphocyte receptor sequences processing pRESTO is a toolkit for processing raw reads from high-throughput sequencing of B cell and T cell repertoires. Dramatic improvements in high-throughput sequencing technologies now enable large-scale characterization of lymphocyte repertoires, defined as the collection of trans-membrane antigen-receptor proteins located on the surface of B cells and T cells. The REpertoire Sequencing TOolkit (pRESTO) is composed of a suite of utilities to handle all stages of sequence processing prior to germline segment assignment. pRESTO is designed to handle either single reads or paired-end reads. It includes features for quality control, primer masking, annotation of reads with sequence embedded barcodes, generation of unique molecular identifier (UMI) consensus sequences, assembly of paired-end reads and identification of duplicate sequences. Numerous options for sequence sorting, sampling and conversion operations are also included. The package is about it appear on https://salsa.debian.org/python-team/modules/presto
