On 19 December 2018 at 11:01, Emmanuel Charpentier wrote:
|
| On a 3.5.1 installation not yet updated, brms has three dependencies,
| none of them having themselves dependencies :
|
| > installed.packages()["brms","Depends"]
| [1] "R (>= 3.2.0), Rcpp (>= 0.12.0), ggplot2 (>= 2.0.0), methods"
| > installed.packages()["Rcpp","Depends"]
| [1] "R (>= 3.0.0)"
| > installed.packages()["ggplot2","Depends"]
| [1] "R (>= 3.1)"
| > installed.packages()["methods","Depends"]
| [1] NA
i) methods is part of R
ii) ggplot2 does not have C++ code AFAIK
iii) we concluded earlier than the stan stack is the likely culprit.
| However, reinstalling these dependencies (except methods, which is an
| unupgradable base package) do not allow for a smooth upgrade :
|
| > install.packages(c("Rcpp","ggplot2","methods"))
| Installation des packages dans ‘/usr/local/lib/R/site-library’
| (car ‘lib’ n'est pas spécifié)
|
| [ Snip... ]
|
| Les packages source téléchargés sont dans
| ‘/tmp/RtmpH946C3/downloaded_packages’
| Warning messages:
| 1: package ‘methods’ is not available (for R version 3.5.1)
Because it is part of r-base-core.
Dirk
| 2: package ‘methods’ is a base package, and should not be updated
|
| * installing *source* package ‘brms’ ...
| ** package ‘brms’ correctement décompressé et sommes MD5 vérifiées
| ** R
| terminate called after throwing an instance of 'std::runtime_error'
| what(): Mutex creation failed
| Aborted
|
| Les packages source téléchargés sont dans
| ‘/tmp/RtmpH946C3/downloaded_packages’
| Warning message:
| In install.packages("brms") :
| l'installation du package ‘brms’ a eu un statut de sortie non nul
|
| Back to the brute-force method...
|
| HTH,
|
| --
| Emmanuel Charpentier
--
http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
