On Wed, Feb 20, 2019 at 08:39:02AM +0000, Michael R. Crusoe wrote: > The difference between the Debian -10 release of htslib v1.9 and the Debian > -9 release of htslib is that libdeflate, GCS, and S3 are enabled. > > This even changes the output of `tabix` itself when indexing > https://github.com/pysam-developers/pysam/blob/master/tests/tabix_data/example.gtf.gz > so it is no surprise that these pysam tests break.
So your suggestion is to generate a new example.gtf.gz to compare with the test result? If yes, would you mind creating such a file to fix the test suite? Thanks for your investigation in any case, Andreas.
