Package: wnpp Severity: wishlist Subject: ITP: bbmap -- short read aligner and other bioinformatic tools Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : bbmap Version : 38.43 Upstream Author : Brian Bushnell, Jon Rood * URL : https://sourceforge.net/projects/bbmap/ * License : BSD-3-clause Programming Lang: C Description : short read aligner and other bioinformatic tools BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and tolerant of errors and numerous large indels. . BBMap is multithreaded as well as the other tools bundled into this package for instance: . BBNorm: Kmer-based error-correction and normalization tool. . Dedupe: Simplifies assemblies by removing duplicate or contained subsequences that share a target percent identity. . Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam, interleaved/paired, and ASCII-33/64, at over 500 MB/s. . BBDuk: Filters, trims, or masks reads with kmer matches to an artifact/contaminant file. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/bbmap