Source: odb-api
Version: 0.18.1-6
Severity: serious
tags: patch
Hello, looks like for some reasons eckit in Ubuntu fails to see the include
directory for openmpi, because it simply doesn't exist
adding libopenmpi-dev dependency to odb-api should fix the issue, bringing the
directory back when cmake tries to find header files
/usr/lib/x86_64-linux-gnu/pkgconfig/odb.pc:ODB_CC=/usr/bin/cc -pthread
-I/usr/lib/x86_64-linux-gnu/openmpi/include
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -Wdate-time
-D_FORTIFY_SOURCE=2 -pipe -fopenmp -fPIC -I${prefix}/include
/usr/lib/x86_64-linux-gnu/cmake/odb/odb-import.cmake:set(ODB_ENVIRONMENT
"ODB_ROOT=/usr;ODB_SYSPATH=/usr/include;ODB_BINPATH=/usr/bin;ODB_BEBINPATH=/usr/bin;ODB_FEBINPATH=/usr/bin;ODB_LIBPATH=/usr/lib;ODB_RTABLE_PATH=/usr/share/odb;ODB_SYSDBPATH=/usr/share/odb;ODB_CC=/usr/bin/cc
-pthread -I/usr/lib/x86_64-linux-gnu/openmpi/include
-I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -Wdate-time
-D_FORTIFY_SOURCE=2 -pipe -fopenmp -fPIC
-I/usr/include;ODB_F90=/usr/bin/gfortran -g -O2
-fdebug-prefix-map=/build/odb-api=. -fstack-protector-strong -fopenmp -fPIC
-ffree-line-length-none -I/usr/include -I/usr/module
-I/usr/odb/module;ODB_COMPILER=/usr/bin/odb98.x -V
-O3;ODB_COMPILER_FLAGS=/usr/share/odb/odb98.flags;ODB_STATIC_LINKING=1;ODB_LD_SHARED=none;ODB_LD_SHARED_SFX=.so;ODB_IOASSIGN_MAXPROC=32;ODB_IOASSIGN_PARAMS=-r
1m -w
1m;ODB_AR=/usr/bin/ar;ODB_GZIP=/bin/gzip;ODB_GUNZIP=/bin/gunzip;ODB_SETUP_SHELL=/bin/sh")
it looks like used and needed
snip of the failing log:
-- The following OPTIONAL packages have not been found:
* Git
* fckit (required version >= 0.6.2)
* transi (required version >= 0.4.4)
* CGAL
* gridtools_storage
-- ENABLE_EXPOSE_SUBPACKAGES is On:
-- All packages in the bundle will be installed at the same level into:
-- /usr
-- Configuring done
CMake Error in atlas/src/atlas/CMakeLists.txt:
Imported target "eckit_mpi" includes non-existent path
"/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi"
in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:
* The path was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and references files it does not
provide.
CMake Error in atlas/src/atlas/CMakeLists.txt:
Imported target "eckit_mpi" includes non-existent path
"/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi"
in its INTERFACE_INCLUDE_DIRECTORIES. Possible reasons include:
* The path was deleted, renamed, or moved to another location.
* An install or uninstall procedure did not complete successfully.
* The installation package was faulty and references files it does not
provide.
trivial patch here:
https://launchpad.net/ubuntu/+source/odb-api/0.18.1-6ubuntu1
Gianfranco
