Control: tags -1 upstream Control: forwarded -1 Edzer Pebesma <edzer.pebe...@uni-muenster.de>
Hi Edzer, as you can read below there is a test suite regression in Ubuntu for the armhf architecture. Do you have any idea how this can be fixed? Kind regards Andreas. On Thu, Nov 21, 2019 at 11:08:59AM -0800, Steve Langasek wrote: > Source: r-cran-sf > Version: 0.8-0+dfsg-1 > Severity: serious > User: ubuntu-de...@lists.ubuntu.com > Usertags: origin-ubuntu focal > > Hi Andreas, > > With the upload of r-cran-sf 0.8-0+dfsg-1, the autopkgtests are failing in > Ubuntu only on armhf due to a regression in alignment handling: > > [...] > Attribute-geometry relationship: 0 constant, 1 aggregate, 1 identity > geometry type: MULTIPOLYGON > dimension: XY > bbox: xmin: 0 ymin: 0 xmax: 1 ymax: 1 > epsg (SRID): NA > proj4string: NA > Group.1 a geometry > 1 1 1.5 MULTIPOLYGON (((0 0, 1 0, 1... > > (a = aggregate(s, list(c(1,1)), mean, do_union = TRUE)) > Bus error (core dumped) > autopkgtest [11:32:17]: test run-unit-test: -----------------------] > [...] > > > (https://objectstorage.prodstack4-5.canonical.com/v1/AUTH_77e2ada1e7a84929a74ba3b87153c0ac/autopkgtest-focal/focal/armhf/r/r-cran-sf/20191109_113707_4303b@/log.gz) > > Since Debian only runs autopkgtests on amd64, this did not block migration > of the new version of the package to Debian testing; nevertheless this is a > serious failure of the package on armhf. I have grabbed a backtrace which > points to a problem in r-cran-sf itself, not in any of its dependencies: > > Program received signal SIGBUS, Bus error. > 0xf47431cc in wkb_read<double> (wkb=<optimized out>, wkb=<optimized out>) > at wkb.cpp:201 > 201 double d = wkb_read<double>(wkb); > (gdb) bt > #0 0xf47431cc in wkb_read<double> (wkb=<optimized out>, wkb=<optimized out>) > at wkb.cpp:201 > #1 read_numeric_matrix (wkb=wkb@entry=0xfffe7ddc, n_dims=n_dims@entry=2, > swap=swap@entry=false, cls=..., empty=empty@entry=0x0) at wkb.cpp:201 > #2 0xf47434b0 in read_matrix_list (wkb=wkb@entry=0xfffe7ddc, > n_dims=n_dims@entry=2, swap=swap@entry=false, cls=..., > empty=empty@entry=0xfffe7d27) at /usr/include/c++/9/ext/new_allocator.h:89 > #3 0xf474430c in read_data (wkb=wkb@entry=0xfffe7ddc, EWKB=EWKB@entry=true, > spatialite=spatialite@entry=false, endian=endian@entry=1, > addclass=addclass@entry=true, type=type@entry=0xfffe7dd4, > srid=srid@entry=0xfffe7dd8) > at /usr/lib/R/site-library/Rcpp/include/Rcpp/vector/generic_proxy.h:37 > #4 0xf474590a in CPL_read_wkb (wkb_list=..., EWKB=EWKB@entry=true, > spatialite=spatialite@entry=false) > at /usr/lib/R/site-library/Rcpp/include/Rcpp/vector/generic_proxy.h:37 > #5 0xf472d5da in sfc_from_geometry(GEOSContextHandle_HS*, > std::vector<std::unique_ptr<GEOSGeom_t, std::function<void (GEOSGeom_t*)> >, > std::allocator<std::unique_ptr<GEOSGeom_t, std::function<void (GEOSGeom_t*)> > > > >&, int, bool) ( > hGEOSCtxt=hGEOSCtxt@entry=0x2154c48, > geom=std::vector of length 1, capacity 1 = {...}, dim=<optimized out>, > free=free@entry=true) > at /usr/lib/R/site-library/Rcpp/include/Rcpp/vector/traits.h:65 > #6 0xf472f542 in CPL_geos_union (sfc=..., by_feature=<optimized out>) > at geos.cpp:600 > #7 0xf47100d8 in _sf_CPL_geos_union (sfcSEXP=0x1f0d988, > by_featureSEXP=0x419568) > at /usr/lib/R/site-library/Rcpp/include/Rcpp/as.h:151 > #8 0xf7ce238c in ?? () from /usr/lib/R/lib/libR.so > Backtrace stopped: previous frame identical to this frame (corrupt stack?) > (gdb) > > -- > Steve Langasek Give me a lever long enough and a Free OS > Debian Developer to set it on, and I can move the world. > Ubuntu Developer https://www.debian.org/ > slanga...@ubuntu.com vor...@debian.org > _______________________________________________ > R-pkg-team mailing list > r-pkg-t...@alioth-lists.debian.net > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/r-pkg-team -- http://fam-tille.de