Good. If you are still missing Tests/Fasta/flowers.pro.gz that's odd, since it was in the official tar ball:
https://files.pythonhosted.org/packages/33/55/becf2b99556588d22b542f3412990bfc79b674e198d9bc58f7bbc333439e/biopython-1.75.tar.gz Peter On Tue, Dec 3, 2019 at 9:13 PM Andreas Tille <andr...@fam-tille.de> wrote: > > Hi Peter, > > On Mon, Dec 02, 2019 at 03:42:21PM +0000, Peter Cock wrote: > > This was included in Biopython 1.74 and 1.75, yet your copy of > > Tests/test_psw.py > > would seem to date from Biopython 1.73 or older. > > > > I suspect an old cached copy of the test folder is largely to blame? > > Arghhh, sorry for wasting your time. The test examples are in > python-biopython-doc package which I forgot to update on my local > machine. I just get: > > ====================================================================== > ERROR: test_gzip_fasta (test_SeqIO.TestZipped) > Testing FASTA with gzip. > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/tmp/autopkgtest.vFO6HI/autopkgtest_tmp/Tests/test_SeqIO.py", line > 156, in test_gzip_fasta > with gzip.open("Fasta/flowers.pro.gz", mode) as handle: > File "/usr/lib/python2.7/gzip.py", line 34, in open > return GzipFile(filename, mode, compresslevel) > File "/usr/lib/python2.7/gzip.py", line 94, in __init__ > fileobj = self.myfileobj = __builtin__.open(filename, mode or 'rb') > IOError: [Errno 2] No such file or directory: 'Fasta/flowers.pro.gz' > > ====================================================================== > > > (now with the real data). > > Kind regards > > Andreas. > > -- > http://fam-tille.de