Control: tags -1 help I have fixed Python2->Python3 migration as well as the FTBFS with pbseqlib 5.3.3+dfsg-1 issue in Git[1]. Unfortunately there is another build issue in the C++ code which I have no idea how to fix:
... g++ -g -O2 -fdebug-prefix-map=/build/pbdagcon-0.3+git20180411.c14c422+ds=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -std=c++14 -Wall -Wuninitialized -pedantic -Wdate- time -D_FORTIFY_SOURCE=2 -MMD -MP -I/build/pbdagcon-0.3+git20180411.c14c422+ds/DAZZ_DB -I/build/pbdagcon-0.3+git20180411.c14c422+ds/DALIGNER -I/usr/include/pbseq/alignment -I/usr/include/ pbseq/pbdata -I/usr/include/pbseq/hdf -I/usr/include/pbseq -isystem.//third-party -c -o DazAlnProvider.o DazAlnProvider.cpp In file included from DazAlnProvider.cpp:10: DazAlnProvider.hpp:97:19: error: expected ')' before '&' token 97 | Target(DAZZ_DB& db, int tspace, int small); | ~ ^ | ) DazAlnProvider.hpp:122:5: error: 'DAZZ_DB' does not name a type 122 | DAZZ_DB db_; | ^~~~~~~ DazAlnProvider.hpp:161:5: error: 'DAZZ_DB' does not name a type 161 | DAZZ_DB db_; | ^~~~~~~ DazAlnProvider.cpp: In constructor 'DazAlnProvider::DazAlnProvider(const ProgramOpts&)': DazAlnProvider.cpp:34:33: error: 'db_' was not declared in this scope 34 | int status = Open_DB(path, &db_); | ^~~ DazAlnProvider.cpp: In destructor 'virtual DazAlnProvider::~DazAlnProvider()': DazAlnProvider.cpp:74:15: error: 'db_' was not declared in this scope 74 | Close_DB(&db_); | ^~~ DazAlnProvider.cpp: In member function 'virtual bool DazAlnProvider::nextTarget(std::string&, std::vector<dagcon::Alignment>&)': DazAlnProvider.cpp:125:25: error: 'db_' was not declared in this scope 125 | seq = Load_Subread(&db_, trg_->id, 0, trg_->length, targSeqBuf_, 0); | ^~~ DazAlnProvider.cpp: At global scope: DazAlnProvider.cpp:225:15: error: expected constructor, destructor, or type conversion before '(' token 225 | Target::Target(DAZZ_DB& db, int tspace, int small) : | ^ DazAlnProvider.cpp: In member function 'void Target::firstRecord(Record&, bool)': DazAlnProvider.cpp:246:14: error: 'db_' was not declared in this scope 246 | length = db_.reads[id].rlen; | ^~~ Any help would be welcome Andreas. [1] https://salsa.debian.org/med-team/pbdagcon -- http://fam-tille.de