Package: wnpp Severity: wishlist Subject: ITP: gerp++ -- identifies constrained elements in multiple alignments Package: wnpp Owner: Michael R. Crusoe <michael.cru...@gmail.com> Severity: wishlist
* Package name : gerp++ Version : 2.1 Upstream Author : , George Asimenos * URL : http://mendel.stanford.edu/SidowLab/downloads/gerp/ * License : GPL-3+ Programming Lang: C Description : identifies constrained elements in multiple alignments GERP is a package for analyzing evolutionary rates and finding constrained elements in a multiple alignment. It uses the notion of "rejected substitutions" (RS) in order to quantify constraint at individual positions as well as over elements spanning multiple positions. . GERP consists of two main components: gerpcol, which analyzes multiple alignments and computes RS scores for all positions, and gerpelem, which finds constrained elements given the RS scores produced by gerpcol. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/gerp++